Experiment: inner cut, R2A soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2186 and Ac3H11_2187 are separated by 13 nucleotides Ac3H11_2187 and Ac3H11_2188 are separated by 25 nucleotides Ac3H11_2188 and Ac3H11_2189 are separated by 45 nucleotides
Ac3H11_2186 - Sensor protein basS/pmrB (EC 2.7.3.-), at 417,553 to 418,854
_2186
Ac3H11_2187 - DNA-binding response regulator, at 418,868 to 419,527
_2187
Ac3H11_2188 - Ni,Fe-hydrogenase I cytochrome b subunit, at 419,553 to 420,098
_2188
Ac3H11_2189 - hypothetical protein, at 420,144 to 420,401
_2189
Position (kb) 418
419
420 Strain fitness (log2 ratio) -2
-1
0
1
2 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.653 kb on - strand, within Ac3H11_2186 at 418.691 kb on - strand, within Ac3H11_2186 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.982 kb on - strand, within Ac3H11_2187 at 418.982 kb on - strand, within Ac3H11_2187 at 419.403 kb on + strand, within Ac3H11_2187 at 419.403 kb on + strand, within Ac3H11_2187 at 419.403 kb on + strand, within Ac3H11_2187 at 419.950 kb on + strand, within Ac3H11_2188 at 419.950 kb on + strand, within Ac3H11_2188 at 419.951 kb on - strand, within Ac3H11_2188 at 419.951 kb on - strand, within Ac3H11_2188 at 420.115 kb on - strand at 420.145 kb on + strand at 420.146 kb on - strand at 420.146 kb on - strand at 420.184 kb on + strand, within Ac3H11_2189 at 420.184 kb on + strand, within Ac3H11_2189 at 420.184 kb on + strand, within Ac3H11_2189 at 420.184 kb on + strand, within Ac3H11_2189 at 420.184 kb on + strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.185 kb on - strand, within Ac3H11_2189 at 420.221 kb on - strand, within Ac3H11_2189 at 420.230 kb on - strand, within Ac3H11_2189 at 420.268 kb on + strand, within Ac3H11_2189 at 420.471 kb on + strand at 420.472 kb on - strand at 420.472 kb on - strand at 420.476 kb on + strand at 420.476 kb on + strand at 420.476 kb on + strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand at 420.477 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay remove 418,385 + Ac3H11_2186 0.64 +0.6 418,385 + Ac3H11_2186 0.64 +1.0 418,385 + Ac3H11_2186 0.64 -0.9 418,385 + Ac3H11_2186 0.64 -1.0 418,385 + Ac3H11_2186 0.64 +0.4 418,386 - Ac3H11_2186 0.64 +0.3 418,386 - Ac3H11_2186 0.64 -0.2 418,386 - Ac3H11_2186 0.64 +0.3 418,386 - Ac3H11_2186 0.64 -0.5 418,386 - Ac3H11_2186 0.64 +0.5 418,386 - Ac3H11_2186 0.64 +0.4 418,653 - Ac3H11_2186 0.84 +0.2 418,691 - Ac3H11_2186 0.87 +0.5 418,981 + Ac3H11_2187 0.17 +1.0 418,981 + Ac3H11_2187 0.17 +0.2 418,981 + Ac3H11_2187 0.17 -2.2 418,981 + Ac3H11_2187 0.17 -0.8 418,981 + Ac3H11_2187 0.17 -0.3 418,982 - Ac3H11_2187 0.17 +1.6 418,982 - Ac3H11_2187 0.17 +0.5 419,403 + Ac3H11_2187 0.81 +1.5 419,403 + Ac3H11_2187 0.81 +0.9 419,403 + Ac3H11_2187 0.81 -2.5 419,950 + Ac3H11_2188 0.73 -0.1 419,950 + Ac3H11_2188 0.73 +0.9 419,951 - Ac3H11_2188 0.73 -1.0 419,951 - Ac3H11_2188 0.73 +1.8 420,115 - +0.3 420,145 + +1.0 420,146 - +0.5 420,146 - +0.6 420,184 + Ac3H11_2189 0.16 +0.4 420,184 + Ac3H11_2189 0.16 -2.7 420,184 + Ac3H11_2189 0.16 +0.3 420,184 + Ac3H11_2189 0.16 +1.3 420,184 + Ac3H11_2189 0.16 +0.8 420,185 - Ac3H11_2189 0.16 +0.5 420,185 - Ac3H11_2189 0.16 +0.5 420,185 - Ac3H11_2189 0.16 +0.8 420,185 - Ac3H11_2189 0.16 -0.5 420,185 - Ac3H11_2189 0.16 +0.4 420,185 - Ac3H11_2189 0.16 +0.9 420,185 - Ac3H11_2189 0.16 +0.3 420,185 - Ac3H11_2189 0.16 +1.1 420,185 - Ac3H11_2189 0.16 +0.0 420,221 - Ac3H11_2189 0.30 -0.0 420,230 - Ac3H11_2189 0.33 +0.6 420,268 + Ac3H11_2189 0.48 +0.2 420,471 + +0.9 420,472 - +0.6 420,472 - +0.3 420,476 + +0.6 420,476 + +0.9 420,476 + +0.5 420,477 - +0.5 420,477 - +0.3 420,477 - +0.4 420,477 - +0.1 420,477 - +1.3 420,477 - +0.3 420,477 - -0.0 420,477 - +0.7 420,477 - +0.4 420,477 - +0.2 420,477 - +0.4 420,477 - -0.1 420,477 - -0.1 420,477 - +0.1 420,477 - +0.3
Or see this region's nucleotide sequence