Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2111

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2110 and Ac3H11_2111 are separated by 1 nucleotidesAc3H11_2111 and Ac3H11_2112 are separated by 154 nucleotidesAc3H11_2112 and Ac3H11_2113 are separated by 79 nucleotides Ac3H11_2110 - Type I secretion system, membrane fusion protein LapC, at 345,863 to 347,278 _2110 Ac3H11_2111 - Type I secretion system ATPase, LssB family LapB, at 347,280 to 349,442 _2111 Ac3H11_2112 - Transcriptional regulator, AraC family, at 349,597 to 350,319 _2112 Ac3H11_2113 - Permease of the drug/metabolite transporter (DMT) superfamily, at 350,399 to 351,232 _2113 Position (kb) 347 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 347.037 kb on + strand, within Ac3H11_2110at 347.725 kb on + strand, within Ac3H11_2111at 347.725 kb on + strand, within Ac3H11_2111at 347.725 kb on + strand, within Ac3H11_2111at 347.726 kb on - strand, within Ac3H11_2111at 347.726 kb on - strand, within Ac3H11_2111at 347.726 kb on - strand, within Ac3H11_2111at 347.726 kb on - strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.752 kb on + strand, within Ac3H11_2111at 347.753 kb on - strand, within Ac3H11_2111at 347.837 kb on - strand, within Ac3H11_2111at 348.097 kb on + strand, within Ac3H11_2111at 348.098 kb on - strand, within Ac3H11_2111at 348.098 kb on - strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.205 kb on + strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.206 kb on - strand, within Ac3H11_2111at 348.478 kb on + strand, within Ac3H11_2111at 348.478 kb on + strand, within Ac3H11_2111at 348.478 kb on + strand, within Ac3H11_2111at 348.478 kb on + strand, within Ac3H11_2111at 348.478 kb on + strand, within Ac3H11_2111at 348.478 kb on + strand, within Ac3H11_2111at 348.479 kb on - strand, within Ac3H11_2111at 348.479 kb on - strand, within Ac3H11_2111at 348.479 kb on - strand, within Ac3H11_2111at 348.479 kb on - strand, within Ac3H11_2111at 348.479 kb on - strand, within Ac3H11_2111at 348.479 kb on - strand, within Ac3H11_2111at 348.479 kb on - strand, within Ac3H11_2111at 348.479 kb on - strand, within Ac3H11_2111at 348.479 kb on - strand, within Ac3H11_2111at 348.859 kb on + strand, within Ac3H11_2111at 348.859 kb on + strand, within Ac3H11_2111at 348.859 kb on + strand, within Ac3H11_2111at 348.860 kb on - strand, within Ac3H11_2111at 348.860 kb on - strand, within Ac3H11_2111at 348.860 kb on - strand, within Ac3H11_2111at 348.860 kb on - strand, within Ac3H11_2111at 348.860 kb on - strand, within Ac3H11_2111at 348.935 kb on - strand, within Ac3H11_2111at 349.036 kb on + strand, within Ac3H11_2111at 349.036 kb on + strand, within Ac3H11_2111at 349.036 kb on + strand, within Ac3H11_2111at 349.036 kb on + strand, within Ac3H11_2111at 349.036 kb on + strand, within Ac3H11_2111at 349.036 kb on + strand, within Ac3H11_2111at 349.036 kb on + strand, within Ac3H11_2111at 349.036 kb on + strand, within Ac3H11_2111at 349.036 kb on + strand, within Ac3H11_2111at 349.037 kb on - strand, within Ac3H11_2111at 349.037 kb on - strand, within Ac3H11_2111at 349.037 kb on - strand, within Ac3H11_2111at 349.037 kb on - strand, within Ac3H11_2111at 349.037 kb on - strand, within Ac3H11_2111at 349.037 kb on - strand, within Ac3H11_2111at 349.037 kb on - strand, within Ac3H11_2111at 349.046 kb on + strand, within Ac3H11_2111at 349.054 kb on + strand, within Ac3H11_2111at 349.055 kb on - strand, within Ac3H11_2111at 349.460 kb on + strandat 349.461 kb on - strandat 349.478 kb on + strandat 349.478 kb on + strandat 349.478 kb on + strandat 349.479 kb on - strandat 349.479 kb on - strandat 349.479 kb on - strandat 349.479 kb on - strandat 349.486 kb on + strandat 349.486 kb on + strandat 349.487 kb on - strandat 349.487 kb on - strandat 349.487 kb on - strandat 349.487 kb on - strandat 349.507 kb on + strandat 349.507 kb on + strandat 349.507 kb on + strandat 349.508 kb on - strandat 349.508 kb on - strandat 349.508 kb on - strandat 349.897 kb on + strand, within Ac3H11_2112at 350.005 kb on + strand, within Ac3H11_2112at 350.005 kb on + strand, within Ac3H11_2112at 350.005 kb on + strand, within Ac3H11_2112at 350.006 kb on - strand, within Ac3H11_2112at 350.006 kb on - strand, within Ac3H11_2112at 350.267 kb on - strandat 350.385 kb on + strandat 350.386 kb on - strandat 350.414 kb on + strandat 350.414 kb on + strandat 350.414 kb on + strandat 350.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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347,037 + Ac3H11_2110 0.83 -1.3
347,725 + Ac3H11_2111 0.21 -2.3
347,725 + Ac3H11_2111 0.21 -2.4
347,725 + Ac3H11_2111 0.21 +0.2
347,726 - Ac3H11_2111 0.21 -0.6
347,726 - Ac3H11_2111 0.21 -1.2
347,726 - Ac3H11_2111 0.21 -2.2
347,726 - Ac3H11_2111 0.21 +1.7
347,752 + Ac3H11_2111 0.22 -0.4
347,752 + Ac3H11_2111 0.22 -0.1
347,752 + Ac3H11_2111 0.22 +0.2
347,752 + Ac3H11_2111 0.22 -0.4
347,752 + Ac3H11_2111 0.22 -2.1
347,752 + Ac3H11_2111 0.22 -1.4
347,752 + Ac3H11_2111 0.22 +0.0
347,753 - Ac3H11_2111 0.22 -1.5
347,837 - Ac3H11_2111 0.26 +1.5
348,097 + Ac3H11_2111 0.38 -1.1
348,098 - Ac3H11_2111 0.38 -0.6
348,098 - Ac3H11_2111 0.38 -1.6
348,205 + Ac3H11_2111 0.43 -2.4
348,205 + Ac3H11_2111 0.43 -1.1
348,205 + Ac3H11_2111 0.43 +0.9
348,205 + Ac3H11_2111 0.43 -1.5
348,205 + Ac3H11_2111 0.43 +0.7
348,205 + Ac3H11_2111 0.43 -1.1
348,205 + Ac3H11_2111 0.43 -0.1
348,205 + Ac3H11_2111 0.43 -0.4
348,205 + Ac3H11_2111 0.43 -0.7
348,205 + Ac3H11_2111 0.43 -1.3
348,205 + Ac3H11_2111 0.43 -2.1
348,205 + Ac3H11_2111 0.43 -0.8
348,206 - Ac3H11_2111 0.43 -1.9
348,206 - Ac3H11_2111 0.43 +0.1
348,206 - Ac3H11_2111 0.43 +1.1
348,206 - Ac3H11_2111 0.43 -1.3
348,206 - Ac3H11_2111 0.43 -1.5
348,206 - Ac3H11_2111 0.43 -1.1
348,206 - Ac3H11_2111 0.43 -1.6
348,206 - Ac3H11_2111 0.43 -0.5
348,206 - Ac3H11_2111 0.43 -1.3
348,478 + Ac3H11_2111 0.55 -1.1
348,478 + Ac3H11_2111 0.55 +0.3
348,478 + Ac3H11_2111 0.55 +0.4
348,478 + Ac3H11_2111 0.55 -0.1
348,478 + Ac3H11_2111 0.55 -3.3
348,478 + Ac3H11_2111 0.55 +1.5
348,479 - Ac3H11_2111 0.55 -2.8
348,479 - Ac3H11_2111 0.55 -2.2
348,479 - Ac3H11_2111 0.55 -1.5
348,479 - Ac3H11_2111 0.55 -0.4
348,479 - Ac3H11_2111 0.55 +0.6
348,479 - Ac3H11_2111 0.55 -1.6
348,479 - Ac3H11_2111 0.55 -0.8
348,479 - Ac3H11_2111 0.55 +0.5
348,479 - Ac3H11_2111 0.55 -0.7
348,859 + Ac3H11_2111 0.73 +0.6
348,859 + Ac3H11_2111 0.73 +0.4
348,859 + Ac3H11_2111 0.73 -0.1
348,860 - Ac3H11_2111 0.73 -1.3
348,860 - Ac3H11_2111 0.73 -0.3
348,860 - Ac3H11_2111 0.73 -0.2
348,860 - Ac3H11_2111 0.73 +0.5
348,860 - Ac3H11_2111 0.73 -2.1
348,935 - Ac3H11_2111 0.77 -1.4
349,036 + Ac3H11_2111 0.81 -0.7
349,036 + Ac3H11_2111 0.81 -2.1
349,036 + Ac3H11_2111 0.81 +0.8
349,036 + Ac3H11_2111 0.81 +0.6
349,036 + Ac3H11_2111 0.81 +0.1
349,036 + Ac3H11_2111 0.81 +0.7
349,036 + Ac3H11_2111 0.81 -0.3
349,036 + Ac3H11_2111 0.81 -0.8
349,036 + Ac3H11_2111 0.81 -1.2
349,037 - Ac3H11_2111 0.81 +1.3
349,037 - Ac3H11_2111 0.81 -0.2
349,037 - Ac3H11_2111 0.81 -0.0
349,037 - Ac3H11_2111 0.81 -0.4
349,037 - Ac3H11_2111 0.81 -1.2
349,037 - Ac3H11_2111 0.81 +1.0
349,037 - Ac3H11_2111 0.81 -1.8
349,046 + Ac3H11_2111 0.82 +1.0
349,054 + Ac3H11_2111 0.82 +0.1
349,055 - Ac3H11_2111 0.82 -1.2
349,460 + -2.8
349,461 - +0.3
349,478 + -0.8
349,478 + -0.8
349,478 + -0.9
349,479 - +0.6
349,479 - -0.3
349,479 - +1.9
349,479 - +0.8
349,486 + +0.0
349,486 + +2.6
349,487 - -0.7
349,487 - -1.0
349,487 - -1.6
349,487 - -0.0
349,507 + -0.3
349,507 + -0.2
349,507 + +2.7
349,508 - -0.7
349,508 - -0.7
349,508 - +0.2
349,897 + Ac3H11_2112 0.41 -2.4
350,005 + Ac3H11_2112 0.56 -0.2
350,005 + Ac3H11_2112 0.56 -0.8
350,005 + Ac3H11_2112 0.56 +0.8
350,006 - Ac3H11_2112 0.57 -2.7
350,006 - Ac3H11_2112 0.57 -3.5
350,267 - -1.5
350,385 + -1.1
350,386 - +0.2
350,414 + -0.0
350,414 + -0.7
350,414 + -0.9
350,414 + +1.7

Or see this region's nucleotide sequence