Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_138

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_137 and Ac3H11_138 are separated by 36 nucleotidesAc3H11_138 and Ac3H11_139 are separated by 17 nucleotidesAc3H11_139 and Ac3H11_140 are separated by 3 nucleotides Ac3H11_137 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 20,789 to 22,075 _137 Ac3H11_138 - Gluconolactonase, at 22,112 to 23,035 _138 Ac3H11_139 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 23,053 to 23,955 _139 Ac3H11_140 - Tricarboxylate transport protein TctC, at 23,959 to 24,915 _140 Position (kb) 22 23 24Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 21.359 kb on + strand, within Ac3H11_137at 21.359 kb on + strand, within Ac3H11_137at 21.659 kb on + strand, within Ac3H11_137at 21.659 kb on + strand, within Ac3H11_137at 21.660 kb on - strand, within Ac3H11_137at 21.660 kb on - strand, within Ac3H11_137at 21.953 kb on + strandat 21.954 kb on - strandat 21.954 kb on - strandat 21.954 kb on - strandat 21.954 kb on - strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.960 kb on - strandat 21.960 kb on - strandat 21.960 kb on - strandat 21.960 kb on - strandat 21.960 kb on - strandat 22.073 kb on + strandat 22.305 kb on + strand, within Ac3H11_138at 22.305 kb on + strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.470 kb on + strand, within Ac3H11_138at 22.470 kb on + strand, within Ac3H11_138at 22.471 kb on - strand, within Ac3H11_138at 22.471 kb on - strand, within Ac3H11_138at 22.549 kb on + strand, within Ac3H11_138at 22.550 kb on - strand, within Ac3H11_138at 22.614 kb on + strand, within Ac3H11_138at 22.614 kb on + strand, within Ac3H11_138at 22.614 kb on + strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.737 kb on + strand, within Ac3H11_138at 22.737 kb on + strand, within Ac3H11_138at 22.738 kb on - strand, within Ac3H11_138at 22.869 kb on + strand, within Ac3H11_138at 22.869 kb on + strand, within Ac3H11_138at 22.870 kb on - strand, within Ac3H11_138at 23.075 kb on + strandat 23.075 kb on + strandat 23.075 kb on + strandat 23.076 kb on - strandat 23.076 kb on - strandat 23.270 kb on + strand, within Ac3H11_139at 23.300 kb on + strand, within Ac3H11_139at 23.300 kb on + strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.726 kb on + strand, within Ac3H11_139at 23.727 kb on - strand, within Ac3H11_139

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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21,359 + Ac3H11_137 0.44 -0.4
21,359 + Ac3H11_137 0.44 +1.8
21,659 + Ac3H11_137 0.68 +0.7
21,659 + Ac3H11_137 0.68 -0.4
21,660 - Ac3H11_137 0.68 -0.4
21,660 - Ac3H11_137 0.68 -0.2
21,953 + -0.9
21,954 - -2.7
21,954 - -2.4
21,954 - +1.4
21,954 - +0.3
21,959 + +0.9
21,959 + +0.7
21,959 + -0.7
21,959 + -1.8
21,959 + -0.7
21,959 + -0.7
21,960 - -0.3
21,960 - -0.4
21,960 - +0.8
21,960 - +0.5
21,960 - +2.1
22,073 + -0.2
22,305 + Ac3H11_138 0.21 -1.3
22,305 + Ac3H11_138 0.21 -0.2
22,306 - Ac3H11_138 0.21 -1.9
22,306 - Ac3H11_138 0.21 -1.3
22,306 - Ac3H11_138 0.21 -0.8
22,306 - Ac3H11_138 0.21 -1.9
22,470 + Ac3H11_138 0.39 +0.4
22,470 + Ac3H11_138 0.39 +2.7
22,471 - Ac3H11_138 0.39 +0.6
22,471 - Ac3H11_138 0.39 +1.1
22,549 + Ac3H11_138 0.47 -1.0
22,550 - Ac3H11_138 0.47 +0.4
22,614 + Ac3H11_138 0.54 -0.9
22,614 + Ac3H11_138 0.54 -1.0
22,614 + Ac3H11_138 0.54 -1.2
22,615 - Ac3H11_138 0.54 -0.2
22,615 - Ac3H11_138 0.54 -1.8
22,615 - Ac3H11_138 0.54 +0.8
22,615 - Ac3H11_138 0.54 +0.0
22,615 - Ac3H11_138 0.54 -1.0
22,737 + Ac3H11_138 0.68 +1.8
22,737 + Ac3H11_138 0.68 +0.2
22,738 - Ac3H11_138 0.68 +1.2
22,869 + Ac3H11_138 0.82 -1.6
22,869 + Ac3H11_138 0.82 -0.7
22,870 - Ac3H11_138 0.82 -2.2
23,075 + +0.0
23,075 + -1.4
23,075 + -4.4
23,076 - -0.4
23,076 - -0.6
23,270 + Ac3H11_139 0.24 -1.3
23,300 + Ac3H11_139 0.27 -1.7
23,300 + Ac3H11_139 0.27 +0.5
23,301 - Ac3H11_139 0.27 +0.5
23,301 - Ac3H11_139 0.27 +0.4
23,301 - Ac3H11_139 0.27 +0.8
23,301 - Ac3H11_139 0.27 -2.7
23,301 - Ac3H11_139 0.27 +1.0
23,301 - Ac3H11_139 0.27 -0.0
23,726 + Ac3H11_139 0.75 +0.7
23,727 - Ac3H11_139 0.75 +0.6

Or see this region's nucleotide sequence