Experiment: inner cut, R2A soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1343 and Ac3H11_1344 are separated by 46 nucleotides Ac3H11_1344 and Ac3H11_1345 are separated by 288 nucleotides
Ac3H11_1343 - PPO candidate 1, at 31,918 to 32,526
_1343
Ac3H11_1344 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 32,573 to 34,783
_1344
Ac3H11_1345 - putative exported protein, at 35,072 to 38,914
_1345
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 31.622 kb on + strand at 31.622 kb on + strand at 31.622 kb on + strand at 31.622 kb on + strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.641 kb on + strand at 31.642 kb on - strand at 31.642 kb on - strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.886 kb on + strand at 31.886 kb on + strand at 31.886 kb on + strand at 31.886 kb on + strand at 31.886 kb on + strand at 31.886 kb on + strand at 31.887 kb on - strand at 31.887 kb on - strand at 31.887 kb on - strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.929 kb on - strand at 31.929 kb on - strand at 31.929 kb on - strand at 31.929 kb on - strand at 31.929 kb on - strand at 31.929 kb on - strand at 31.947 kb on - strand at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.013 kb on - strand, within Ac3H11_1343 at 32.013 kb on - strand, within Ac3H11_1343 at 32.013 kb on - strand, within Ac3H11_1343 at 32.013 kb on - strand, within Ac3H11_1343 at 32.075 kb on + strand, within Ac3H11_1343 at 32.075 kb on + strand, within Ac3H11_1343 at 32.076 kb on - strand, within Ac3H11_1343 at 32.076 kb on - strand, within Ac3H11_1343 at 32.076 kb on - strand, within Ac3H11_1343 at 32.077 kb on + strand, within Ac3H11_1343 at 32.077 kb on + strand, within Ac3H11_1343 at 32.077 kb on + strand, within Ac3H11_1343 at 32.077 kb on + strand, within Ac3H11_1343 at 32.078 kb on - strand, within Ac3H11_1343 at 32.078 kb on - strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.132 kb on + strand, within Ac3H11_1343 at 32.132 kb on + strand, within Ac3H11_1343 at 32.133 kb on - strand, within Ac3H11_1343 at 32.133 kb on - strand, within Ac3H11_1343 at 32.133 kb on - strand, within Ac3H11_1343 at 32.228 kb on + strand, within Ac3H11_1343 at 32.229 kb on - strand, within Ac3H11_1343 at 32.280 kb on + strand, within Ac3H11_1343 at 32.280 kb on + strand, within Ac3H11_1343 at 32.280 kb on + strand, within Ac3H11_1343 at 32.324 kb on + strand, within Ac3H11_1343 at 32.490 kb on + strand at 32.508 kb on + strand at 32.508 kb on + strand at 32.574 kb on + strand at 34.793 kb on - strand at 34.945 kb on + strand at 34.945 kb on + strand at 34.990 kb on - strand at 35.145 kb on - strand at 35.159 kb on + strand at 35.159 kb on + strand at 35.159 kb on + strand at 35.159 kb on + strand at 35.160 kb on - strand at 35.184 kb on + strand at 35.184 kb on + strand at 35.340 kb on + strand at 35.340 kb on + strand at 35.364 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay remove 31,622 + +0.6 31,622 + -1.5 31,622 + -0.4 31,622 + -0.3 31,623 - -0.7 31,623 - -0.9 31,623 - -1.8 31,623 - -1.4 31,623 - +0.0 31,623 - +0.1 31,623 - +1.3 31,623 - -0.4 31,623 - +0.7 31,623 - -2.0 31,623 - -0.3 31,623 - +1.0 31,623 - +0.4 31,641 + +0.5 31,642 - +1.8 31,642 - +0.2 31,845 + +1.9 31,845 + -1.3 31,845 + +0.2 31,845 + -0.9 31,845 + +0.1 31,845 + +1.8 31,845 + -1.1 31,846 - +1.0 31,846 - +2.8 31,846 - -2.0 31,846 - +2.6 31,846 - -0.6 31,846 - +0.3 31,846 - -2.9 31,886 + +0.7 31,886 + +2.3 31,886 + +0.0 31,886 + +1.3 31,886 + +0.4 31,886 + +0.4 31,887 - -1.4 31,887 - -0.1 31,887 - -1.9 31,890 + +0.6 31,890 + -0.4 31,890 + -1.7 31,890 + +0.4 31,890 + +0.8 31,890 + -1.3 31,890 + -1.7 31,890 + +0.7 31,890 + -0.9 31,890 + -0.4 31,890 + +0.7 31,890 + -0.1 31,890 + -0.6 31,890 + +1.3 31,891 - -1.9 31,891 - -0.5 31,891 - -2.6 31,891 - +1.9 31,891 - +0.2 31,891 - +0.0 31,891 - -0.9 31,891 - -0.3 31,928 + +1.2 31,928 + -0.9 31,928 + +0.6 31,928 + -0.9 31,928 + -0.1 31,928 + +2.6 31,928 + -1.8 31,928 + -0.2 31,928 + -0.2 31,929 - +0.6 31,929 - -0.7 31,929 - -0.6 31,929 - +0.1 31,929 - +1.4 31,929 - +0.6 31,947 - +1.6 32,012 + Ac3H11_1343 0.15 -1.2 32,012 + Ac3H11_1343 0.15 +1.7 32,012 + Ac3H11_1343 0.15 -0.5 32,012 + Ac3H11_1343 0.15 -0.7 32,012 + Ac3H11_1343 0.15 +2.2 32,012 + Ac3H11_1343 0.15 -1.2 32,012 + Ac3H11_1343 0.15 +0.2 32,012 + Ac3H11_1343 0.15 +0.2 32,013 - Ac3H11_1343 0.16 -0.4 32,013 - Ac3H11_1343 0.16 +1.5 32,013 - Ac3H11_1343 0.16 +2.5 32,013 - Ac3H11_1343 0.16 -0.8 32,075 + Ac3H11_1343 0.26 +2.3 32,075 + Ac3H11_1343 0.26 +0.4 32,076 - Ac3H11_1343 0.26 +1.3 32,076 - Ac3H11_1343 0.26 -1.8 32,076 - Ac3H11_1343 0.26 -0.8 32,077 + Ac3H11_1343 0.26 -0.8 32,077 + Ac3H11_1343 0.26 -0.3 32,077 + Ac3H11_1343 0.26 -2.5 32,077 + Ac3H11_1343 0.26 +1.5 32,078 - Ac3H11_1343 0.26 +0.6 32,078 - Ac3H11_1343 0.26 +0.7 32,105 + Ac3H11_1343 0.31 -0.4 32,105 + Ac3H11_1343 0.31 -0.6 32,105 + Ac3H11_1343 0.31 +1.3 32,105 + Ac3H11_1343 0.31 -0.7 32,105 + Ac3H11_1343 0.31 +1.0 32,105 + Ac3H11_1343 0.31 +0.8 32,105 + Ac3H11_1343 0.31 +0.6 32,105 + Ac3H11_1343 0.31 -0.4 32,105 + Ac3H11_1343 0.31 +2.8 32,105 + Ac3H11_1343 0.31 +0.2 32,105 + Ac3H11_1343 0.31 +0.4 32,105 + Ac3H11_1343 0.31 +0.4 32,105 + Ac3H11_1343 0.31 +2.1 32,105 + Ac3H11_1343 0.31 +2.0 32,105 + Ac3H11_1343 0.31 -0.0 32,106 - Ac3H11_1343 0.31 -0.1 32,106 - Ac3H11_1343 0.31 -2.0 32,106 - Ac3H11_1343 0.31 +0.4 32,106 - Ac3H11_1343 0.31 -0.9 32,106 - Ac3H11_1343 0.31 +0.2 32,106 - Ac3H11_1343 0.31 -0.5 32,106 - Ac3H11_1343 0.31 -2.3 32,106 - Ac3H11_1343 0.31 -0.1 32,106 - Ac3H11_1343 0.31 -0.3 32,106 - Ac3H11_1343 0.31 -0.2 32,106 - Ac3H11_1343 0.31 +0.7 32,106 - Ac3H11_1343 0.31 +0.8 32,106 - Ac3H11_1343 0.31 -2.0 32,106 - Ac3H11_1343 0.31 +1.7 32,106 - Ac3H11_1343 0.31 +1.9 32,106 - Ac3H11_1343 0.31 +1.3 32,106 - Ac3H11_1343 0.31 +0.1 32,106 - Ac3H11_1343 0.31 -0.2 32,106 - Ac3H11_1343 0.31 -1.0 32,106 - Ac3H11_1343 0.31 -0.0 32,106 - Ac3H11_1343 0.31 -0.2 32,132 + Ac3H11_1343 0.35 +1.4 32,132 + Ac3H11_1343 0.35 -1.1 32,133 - Ac3H11_1343 0.35 -1.1 32,133 - Ac3H11_1343 0.35 +0.7 32,133 - Ac3H11_1343 0.35 -1.2 32,228 + Ac3H11_1343 0.51 -1.6 32,229 - Ac3H11_1343 0.51 +0.9 32,280 + Ac3H11_1343 0.59 -0.2 32,280 + Ac3H11_1343 0.59 +0.9 32,280 + Ac3H11_1343 0.59 +0.9 32,324 + Ac3H11_1343 0.67 +0.7 32,490 + -0.1 32,508 + +0.8 32,508 + +1.5 32,574 + -0.3 34,793 - -1.8 34,945 + -0.2 34,945 + -0.4 34,990 - +0.2 35,145 - +0.8 35,159 + +0.1 35,159 + -0.5 35,159 + +0.6 35,159 + +1.6 35,160 - +1.5 35,184 + +0.2 35,184 + +1.0 35,340 + +1.8 35,340 + +0.1 35,364 + -0.2
Or see this region's nucleotide sequence