Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1033

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1030 and Ac3H11_1031 are separated by 261 nucleotidesAc3H11_1031 and Ac3H11_1032 are separated by 36 nucleotidesAc3H11_1032 and Ac3H11_1033 overlap by 4 nucleotidesAc3H11_1033 and Ac3H11_1034 are separated by 92 nucleotidesAc3H11_1034 and Ac3H11_1035 are separated by 52 nucleotides Ac3H11_1030 - hypothetical protein, at 150,666 to 150,872 _1030 Ac3H11_1031 - hypothetical protein, at 151,134 to 151,307 _1031 Ac3H11_1032 - Truncated hemoglobins, at 151,344 to 151,793 _1032 Ac3H11_1033 - Nitric oxide-dependent regulator DnrN or NorA, at 151,790 to 152,560 _1033 Ac3H11_1034 - Nitrite-sensitive transcriptional repressor NsrR, at 152,653 to 153,192 _1034 Ac3H11_1035 - Transcriptional regulator, AraC family, at 153,245 to 154,267 _1035 Position (kb) 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 150.798 kb on + strand, within Ac3H11_1030at 150.798 kb on + strand, within Ac3H11_1030at 150.798 kb on + strand, within Ac3H11_1030at 150.799 kb on - strand, within Ac3H11_1030at 150.799 kb on - strand, within Ac3H11_1030at 150.799 kb on - strand, within Ac3H11_1030at 150.799 kb on - strand, within Ac3H11_1030at 150.799 kb on - strand, within Ac3H11_1030at 150.799 kb on - strand, within Ac3H11_1030at 150.799 kb on - strand, within Ac3H11_1030at 150.799 kb on - strand, within Ac3H11_1030at 150.799 kb on - strand, within Ac3H11_1030at 150.799 kb on - strand, within Ac3H11_1030at 150.832 kb on + strand, within Ac3H11_1030at 150.832 kb on + strand, within Ac3H11_1030at 150.832 kb on + strand, within Ac3H11_1030at 150.832 kb on + strand, within Ac3H11_1030at 150.833 kb on - strand, within Ac3H11_1030at 150.902 kb on + strandat 150.902 kb on + strandat 150.902 kb on + strandat 150.902 kb on + strandat 150.903 kb on - strandat 150.916 kb on + strandat 150.916 kb on + strandat 150.916 kb on + strandat 150.917 kb on - strandat 150.917 kb on - strandat 150.993 kb on + strandat 150.993 kb on + strandat 151.093 kb on + strandat 151.093 kb on + strandat 151.093 kb on + strandat 151.093 kb on + strandat 151.094 kb on - strandat 151.106 kb on + strandat 151.107 kb on - strandat 151.107 kb on - strandat 151.107 kb on - strandat 151.129 kb on + strandat 151.129 kb on + strandat 151.129 kb on + strandat 151.129 kb on + strandat 151.130 kb on - strandat 151.130 kb on - strandat 151.130 kb on - strandat 151.130 kb on - strandat 151.146 kb on - strandat 151.305 kb on + strandat 151.305 kb on + strandat 151.305 kb on + strandat 151.306 kb on - strandat 151.310 kb on + strandat 151.311 kb on - strandat 151.409 kb on - strand, within Ac3H11_1032at 151.705 kb on + strand, within Ac3H11_1032at 151.706 kb on - strand, within Ac3H11_1032at 151.706 kb on - strand, within Ac3H11_1032at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strandat 151.948 kb on - strand, within Ac3H11_1033at 152.284 kb on + strand, within Ac3H11_1033at 152.285 kb on - strand, within Ac3H11_1033at 152.285 kb on - strand, within Ac3H11_1033at 152.285 kb on - strand, within Ac3H11_1033at 152.285 kb on - strand, within Ac3H11_1033at 152.285 kb on - strand, within Ac3H11_1033at 152.622 kb on + strandat 152.622 kb on + strandat 152.622 kb on + strandat 152.623 kb on - strandat 152.623 kb on - strandat 152.677 kb on + strandat 152.678 kb on - strandat 152.678 kb on - strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.759 kb on - strand, within Ac3H11_1034at 153.011 kb on - strand, within Ac3H11_1034at 153.011 kb on - strand, within Ac3H11_1034at 153.011 kb on - strand, within Ac3H11_1034at 153.011 kb on - strand, within Ac3H11_1034

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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150,798 + Ac3H11_1030 0.64 +0.0
150,798 + Ac3H11_1030 0.64 +1.4
150,798 + Ac3H11_1030 0.64 -0.2
150,799 - Ac3H11_1030 0.64 -0.1
150,799 - Ac3H11_1030 0.64 +0.2
150,799 - Ac3H11_1030 0.64 -0.4
150,799 - Ac3H11_1030 0.64 -2.1
150,799 - Ac3H11_1030 0.64 -1.4
150,799 - Ac3H11_1030 0.64 -1.6
150,799 - Ac3H11_1030 0.64 -0.9
150,799 - Ac3H11_1030 0.64 -1.7
150,799 - Ac3H11_1030 0.64 -1.0
150,799 - Ac3H11_1030 0.64 -0.8
150,832 + Ac3H11_1030 0.80 -0.7
150,832 + Ac3H11_1030 0.80 -2.9
150,832 + Ac3H11_1030 0.80 -0.9
150,832 + Ac3H11_1030 0.80 -0.7
150,833 - Ac3H11_1030 0.81 +1.9
150,902 + -2.7
150,902 + +1.5
150,902 + +0.3
150,902 + -0.6
150,903 - +0.5
150,916 + +0.6
150,916 + -2.0
150,916 + -0.4
150,917 - +1.7
150,917 - -0.1
150,993 + +3.1
150,993 + +0.5
151,093 + -0.6
151,093 + +0.4
151,093 + -1.0
151,093 + -0.9
151,094 - +0.1
151,106 + -1.0
151,107 - +0.8
151,107 - +0.6
151,107 - +0.3
151,129 + -0.5
151,129 + +0.8
151,129 + +0.5
151,129 + -1.3
151,130 - -0.0
151,130 - -1.5
151,130 - +2.6
151,130 - -0.0
151,146 - -0.6
151,305 + -0.6
151,305 + +0.6
151,305 + +0.3
151,306 - +0.2
151,310 + -1.2
151,311 - +0.0
151,409 - Ac3H11_1032 0.14 +0.6
151,705 + Ac3H11_1032 0.80 +0.3
151,706 - Ac3H11_1032 0.80 -2.5
151,706 - Ac3H11_1032 0.80 +0.3
151,947 + Ac3H11_1033 0.20 -0.0
151,947 + Ac3H11_1033 0.20 +2.7
151,947 + Ac3H11_1033 0.20 +0.4
151,947 + Ac3H11_1033 0.20 +0.6
151,947 + Ac3H11_1033 0.20 -1.9
151,947 + Ac3H11_1033 0.20 -0.3
151,947 + Ac3H11_1033 0.20 +0.8
151,947 + Ac3H11_1033 0.20 +0.7
151,947 + Ac3H11_1033 0.20 -0.9
151,948 - Ac3H11_1033 0.20 -0.1
151,948 - Ac3H11_1033 0.20 +1.2
151,948 - Ac3H11_1033 0.20 -0.2
151,948 - Ac3H11_1033 0.20 +1.5
151,948 - Ac3H11_1033 0.20 +0.2
151,948 - Ac3H11_1033 0.20 -0.7
151,948 - Ac3H11_1033 0.20 +2.8
151,948 - Ac3H11_1033 0.20 +1.2
151,948 - Ac3H11_1033 0.20 +1.8
151,948 - +4.2
151,948 - Ac3H11_1033 0.20 -0.8
152,284 + Ac3H11_1033 0.64 +0.5
152,285 - Ac3H11_1033 0.64 +0.5
152,285 - Ac3H11_1033 0.64 -2.5
152,285 - Ac3H11_1033 0.64 +0.2
152,285 - Ac3H11_1033 0.64 +1.3
152,285 - Ac3H11_1033 0.64 +1.0
152,622 + +0.3
152,622 + +0.1
152,622 + -0.6
152,623 - +1.1
152,623 - -0.4
152,677 + -0.9
152,678 - +0.6
152,678 - -0.7
152,698 + +0.0
152,698 + +0.9
152,698 + -0.5
152,698 + -1.3
152,698 + +0.8
152,698 + -2.3
152,698 + -0.7
152,699 - +0.1
152,699 - +0.3
152,699 - -2.5
152,699 - -1.7
152,759 - Ac3H11_1034 0.20 +0.5
153,011 - Ac3H11_1034 0.66 -2.3
153,011 - Ac3H11_1034 0.66 -0.3
153,011 - Ac3H11_1034 0.66 +0.4
153,011 - Ac3H11_1034 0.66 -0.5

Or see this region's nucleotide sequence