Experiment: inner cut, R2A soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1002 and Ac3H11_1003 are separated by 136 nucleotides Ac3H11_1003 and Ac3H11_1004 are separated by 305 nucleotides
Ac3H11_1002 - ABC transporter ATP-binding protein, at 126,016 to 127,086
_1002
Ac3H11_1003 - ABC transporter substrate-binding protein, at 127,223 to 128,461
_1003
Ac3H11_1004 - ABC transporter permease protein, at 128,767 to 129,681
_1004
Position (kb) 127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 126.709 kb on + strand, within Ac3H11_1002 at 126.710 kb on - strand, within Ac3H11_1002 at 126.756 kb on + strand, within Ac3H11_1002 at 126.756 kb on + strand, within Ac3H11_1002 at 126.881 kb on - strand, within Ac3H11_1002 at 126.881 kb on - strand, within Ac3H11_1002 at 126.881 kb on - strand, within Ac3H11_1002 at 126.892 kb on + strand, within Ac3H11_1002 at 126.892 kb on + strand, within Ac3H11_1002 at 126.893 kb on - strand, within Ac3H11_1002 at 126.893 kb on - strand, within Ac3H11_1002 at 126.893 kb on - strand, within Ac3H11_1002 at 126.893 kb on - strand, within Ac3H11_1002 at 126.893 kb on - strand, within Ac3H11_1002 at 126.952 kb on + strand, within Ac3H11_1002 at 127.391 kb on + strand, within Ac3H11_1003 at 127.391 kb on + strand, within Ac3H11_1003 at 127.391 kb on + strand, within Ac3H11_1003 at 127.392 kb on - strand, within Ac3H11_1003 at 127.392 kb on - strand, within Ac3H11_1003 at 127.392 kb on - strand, within Ac3H11_1003 at 127.469 kb on + strand, within Ac3H11_1003 at 127.469 kb on + strand, within Ac3H11_1003 at 127.469 kb on + strand, within Ac3H11_1003 at 127.470 kb on - strand, within Ac3H11_1003 at 127.625 kb on + strand, within Ac3H11_1003 at 127.625 kb on + strand, within Ac3H11_1003 at 127.626 kb on - strand, within Ac3H11_1003 at 127.697 kb on + strand, within Ac3H11_1003 at 127.808 kb on - strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.859 kb on + strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.860 kb on - strand, within Ac3H11_1003 at 127.865 kb on + strand, within Ac3H11_1003 at 127.865 kb on + strand, within Ac3H11_1003 at 128.090 kb on + strand, within Ac3H11_1003 at 128.156 kb on + strand, within Ac3H11_1003 at 128.157 kb on - strand, within Ac3H11_1003 at 128.157 kb on - strand, within Ac3H11_1003 at 128.198 kb on + strand, within Ac3H11_1003 at 128.199 kb on - strand, within Ac3H11_1003 at 128.199 kb on - strand, within Ac3H11_1003 at 128.219 kb on + strand, within Ac3H11_1003 at 128.220 kb on - strand, within Ac3H11_1003 at 128.220 kb on - strand, within Ac3H11_1003 at 128.273 kb on + strand, within Ac3H11_1003 at 128.366 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.423 kb on + strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.424 kb on - strand at 128.927 kb on - strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.959 kb on + strand, within Ac3H11_1004 at 128.960 kb on - strand, within Ac3H11_1004 at 128.960 kb on - strand, within Ac3H11_1004 at 129.022 kb on + strand, within Ac3H11_1004 at 129.022 kb on + strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.023 kb on - strand, within Ac3H11_1004 at 129.025 kb on + strand, within Ac3H11_1004 at 129.025 kb on + strand, within Ac3H11_1004 at 129.026 kb on - strand, within Ac3H11_1004 at 129.026 kb on - strand, within Ac3H11_1004 at 129.319 kb on + strand, within Ac3H11_1004 at 129.319 kb on + strand, within Ac3H11_1004
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay remove 126,709 + Ac3H11_1002 0.65 +0.8 126,710 - Ac3H11_1002 0.65 -0.2 126,756 + Ac3H11_1002 0.69 -0.9 126,756 + Ac3H11_1002 0.69 +1.8 126,881 - Ac3H11_1002 0.81 -1.8 126,881 - Ac3H11_1002 0.81 -1.8 126,881 - Ac3H11_1002 0.81 -0.8 126,892 + Ac3H11_1002 0.82 +1.1 126,892 + Ac3H11_1002 0.82 -0.1 126,893 - Ac3H11_1002 0.82 +0.5 126,893 - Ac3H11_1002 0.82 +2.2 126,893 - Ac3H11_1002 0.82 +1.9 126,893 - Ac3H11_1002 0.82 +0.2 126,893 - Ac3H11_1002 0.82 -0.8 126,952 + Ac3H11_1002 0.87 +0.9 127,391 + Ac3H11_1003 0.14 +0.9 127,391 + Ac3H11_1003 0.14 -0.5 127,391 + Ac3H11_1003 0.14 -0.6 127,392 - Ac3H11_1003 0.14 +1.2 127,392 - Ac3H11_1003 0.14 +1.0 127,392 - Ac3H11_1003 0.14 +3.4 127,469 + Ac3H11_1003 0.20 +0.3 127,469 + Ac3H11_1003 0.20 +0.9 127,469 + Ac3H11_1003 0.20 -0.6 127,470 - Ac3H11_1003 0.20 -1.2 127,625 + Ac3H11_1003 0.32 -0.3 127,625 + Ac3H11_1003 0.32 -2.0 127,626 - Ac3H11_1003 0.33 +0.2 127,697 + Ac3H11_1003 0.38 +0.9 127,808 - Ac3H11_1003 0.47 -0.1 127,859 + Ac3H11_1003 0.51 +2.2 127,859 + Ac3H11_1003 0.51 -0.3 127,859 + Ac3H11_1003 0.51 +0.4 127,859 + Ac3H11_1003 0.51 -0.6 127,859 + Ac3H11_1003 0.51 -1.6 127,859 + Ac3H11_1003 0.51 +0.1 127,860 - Ac3H11_1003 0.51 -1.1 127,860 - Ac3H11_1003 0.51 +0.9 127,860 - Ac3H11_1003 0.51 +0.5 127,860 - Ac3H11_1003 0.51 +0.7 127,865 + Ac3H11_1003 0.52 +0.4 127,865 + Ac3H11_1003 0.52 +1.2 128,090 + Ac3H11_1003 0.70 +1.0 128,156 + Ac3H11_1003 0.75 +1.6 128,157 - Ac3H11_1003 0.75 -0.1 128,157 - Ac3H11_1003 0.75 -2.0 128,198 + Ac3H11_1003 0.79 +0.1 128,199 - Ac3H11_1003 0.79 -0.8 128,199 - Ac3H11_1003 0.79 +0.5 128,219 + Ac3H11_1003 0.80 -0.4 128,220 - Ac3H11_1003 0.80 -1.3 128,220 - Ac3H11_1003 0.80 -1.8 128,273 + Ac3H11_1003 0.85 +0.3 128,366 + -0.3 128,423 + +4.3 128,423 + +1.2 128,423 + -3.1 128,423 + +0.3 128,423 + -0.2 128,424 - +0.2 128,424 - -0.7 128,424 - -0.3 128,424 - +0.9 128,424 - +1.2 128,424 - +1.1 128,424 - +0.8 128,424 - -0.0 128,424 - -0.8 128,424 - +0.9 128,424 - +1.0 128,424 - +0.9 128,927 - Ac3H11_1004 0.17 -0.1 128,959 + Ac3H11_1004 0.21 -2.1 128,959 + Ac3H11_1004 0.21 -0.1 128,959 + Ac3H11_1004 0.21 +1.4 128,959 + Ac3H11_1004 0.21 +0.5 128,960 - Ac3H11_1004 0.21 -0.0 128,960 - Ac3H11_1004 0.21 +0.8 129,022 + Ac3H11_1004 0.28 +0.3 129,022 + Ac3H11_1004 0.28 +2.5 129,023 - Ac3H11_1004 0.28 +0.5 129,023 - Ac3H11_1004 0.28 -1.9 129,023 - Ac3H11_1004 0.28 -0.3 129,025 + Ac3H11_1004 0.28 -0.0 129,025 + Ac3H11_1004 0.28 +0.7 129,026 - Ac3H11_1004 0.28 +1.0 129,026 - Ac3H11_1004 0.28 -2.2 129,319 + Ac3H11_1004 0.60 +0.0 129,319 + Ac3H11_1004 0.60 +0.5
Or see this region's nucleotide sequence