Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4066 and Shewana3_4067 overlap by 4 nucleotides Shewana3_4067 and Shewana3_4068 are separated by 42 nucleotides Shewana3_4068 and Shewana3_4069 are separated by 101 nucleotides
Shewana3_4066: Shewana3_4066 - CzcA family heavy metal efflux protein (RefSeq), at 4,885,090 to 4,888,143
_4066
Shewana3_4067: Shewana3_4067 - hypothetical protein (RefSeq), at 4,888,140 to 4,888,445
_4067
Shewana3_4068: Shewana3_4068 - hypothetical protein (RefSeq), at 4,888,488 to 4,889,123
_4068
Shewana3_4069: Shewana3_4069 - metal dependent phosphohydrolase (RefSeq), at 4,889,225 to 4,890,415
_4069
Position (kb) 4888
4889
4890 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4887.488 kb on + strand, within Shewana3_4066 at 4887.705 kb on - strand, within Shewana3_4066 at 4887.824 kb on + strand, within Shewana3_4066 at 4887.861 kb on + strand at 4888.231 kb on + strand, within Shewana3_4067 at 4888.231 kb on + strand, within Shewana3_4067 at 4888.231 kb on + strand, within Shewana3_4067 at 4888.239 kb on - strand, within Shewana3_4067 at 4888.239 kb on - strand, within Shewana3_4067 at 4888.239 kb on - strand, within Shewana3_4067 at 4888.261 kb on + strand, within Shewana3_4067 at 4888.296 kb on + strand, within Shewana3_4067 at 4888.303 kb on - strand, within Shewana3_4067 at 4888.347 kb on - strand, within Shewana3_4067 at 4888.369 kb on - strand, within Shewana3_4067 at 4888.394 kb on + strand, within Shewana3_4067 at 4888.591 kb on - strand, within Shewana3_4068 at 4888.766 kb on - strand, within Shewana3_4068 at 4888.961 kb on + strand, within Shewana3_4068 at 4889.076 kb on - strand at 4889.236 kb on - strand at 4889.480 kb on + strand, within Shewana3_4069 at 4889.488 kb on - strand, within Shewana3_4069 at 4889.548 kb on + strand, within Shewana3_4069 at 4889.612 kb on - strand, within Shewana3_4069 at 4889.646 kb on - strand, within Shewana3_4069 at 4889.651 kb on - strand, within Shewana3_4069 at 4889.655 kb on - strand, within Shewana3_4069 at 4889.778 kb on - strand, within Shewana3_4069 at 4889.803 kb on - strand, within Shewana3_4069 at 4889.822 kb on - strand, within Shewana3_4069 at 4889.824 kb on + strand, within Shewana3_4069 at 4889.861 kb on + strand, within Shewana3_4069 at 4889.880 kb on + strand, within Shewana3_4069 at 4889.880 kb on + strand, within Shewana3_4069 at 4889.880 kb on + strand, within Shewana3_4069 at 4889.888 kb on + strand, within Shewana3_4069 at 4889.893 kb on + strand, within Shewana3_4069 at 4889.962 kb on + strand, within Shewana3_4069 at 4889.981 kb on - strand, within Shewana3_4069 at 4889.998 kb on + strand, within Shewana3_4069 at 4890.035 kb on - strand, within Shewana3_4069
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 4,887,488 + Shewana3_4066 0.79 -0.2 4,887,705 - Shewana3_4066 0.86 -0.1 4,887,824 + Shewana3_4066 0.90 -1.6 4,887,861 + -0.3 4,888,231 + Shewana3_4067 0.30 -0.4 4,888,231 + Shewana3_4067 0.30 +0.0 4,888,231 + Shewana3_4067 0.30 +0.3 4,888,239 - Shewana3_4067 0.32 -0.2 4,888,239 - Shewana3_4067 0.32 -0.1 4,888,239 - Shewana3_4067 0.32 -0.8 4,888,261 + Shewana3_4067 0.40 +0.1 4,888,296 + Shewana3_4067 0.51 +0.0 4,888,303 - Shewana3_4067 0.53 +0.1 4,888,347 - Shewana3_4067 0.68 +0.0 4,888,369 - Shewana3_4067 0.75 -0.1 4,888,394 + Shewana3_4067 0.83 +0.1 4,888,591 - Shewana3_4068 0.16 +0.2 4,888,766 - Shewana3_4068 0.44 +0.3 4,888,961 + Shewana3_4068 0.74 +0.2 4,889,076 - +0.2 4,889,236 - +3.8 4,889,480 + Shewana3_4069 0.21 +3.0 4,889,488 - Shewana3_4069 0.22 +1.8 4,889,548 + Shewana3_4069 0.27 +3.8 4,889,612 - Shewana3_4069 0.32 +2.2 4,889,646 - Shewana3_4069 0.35 +1.5 4,889,651 - Shewana3_4069 0.36 +4.0 4,889,655 - Shewana3_4069 0.36 +3.8 4,889,778 - Shewana3_4069 0.46 +3.9 4,889,803 - Shewana3_4069 0.49 +4.0 4,889,822 - Shewana3_4069 0.50 +3.6 4,889,824 + Shewana3_4069 0.50 +3.1 4,889,861 + Shewana3_4069 0.53 +1.5 4,889,880 + Shewana3_4069 0.55 +2.6 4,889,880 + Shewana3_4069 0.55 +3.5 4,889,880 + Shewana3_4069 0.55 +3.6 4,889,888 + Shewana3_4069 0.56 +1.2 4,889,893 + Shewana3_4069 0.56 +2.0 4,889,962 + Shewana3_4069 0.62 +3.6 4,889,981 - Shewana3_4069 0.63 +3.6 4,889,998 + Shewana3_4069 0.65 +3.9 4,890,035 - Shewana3_4069 0.68 +4.1
Or see this region's nucleotide sequence