Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3879

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3878 and rnpB are separated by 131 nucleotidesrnpB and Shewana3_3879 are separated by 113 nucleotidesShewana3_3879 and Shewana3_3880 are separated by 88 nucleotides Shewana3_3878: Shewana3_3878 - hypothetical protein (RefSeq), at 4,658,311 to 4,658,817 _3878 Shewana3_R0137: rnpB - RNA component of RNaseP (NCBI), at 4,658,949 to 4,659,248 rnpB Shewana3_3879: Shewana3_3879 - hypothetical protein (RefSeq), at 4,659,362 to 4,660,207 _3879 Shewana3_3880: Shewana3_3880 - LppC family lipoprotein (RefSeq), at 4,660,296 to 4,662,179 _3880 Position (kb) 4659 4660 4661Strain fitness (log2 ratio) -2 -1 0 1at 4658.452 kb on + strand, within Shewana3_3878at 4658.470 kb on + strand, within Shewana3_3878at 4658.484 kb on - strand, within Shewana3_3878at 4658.551 kb on + strand, within Shewana3_3878at 4658.871 kb on + strandat 4659.339 kb on - strandat 4659.392 kb on - strandat 4659.454 kb on + strand, within Shewana3_3879at 4659.562 kb on + strand, within Shewana3_3879at 4659.668 kb on + strand, within Shewana3_3879at 4659.697 kb on - strand, within Shewana3_3879at 4659.748 kb on + strand, within Shewana3_3879at 4659.800 kb on - strand, within Shewana3_3879at 4659.924 kb on - strand, within Shewana3_3879at 4660.021 kb on + strand, within Shewana3_3879at 4660.029 kb on - strand, within Shewana3_3879at 4660.206 kb on + strandat 4660.246 kb on + strandat 4660.284 kb on + strandat 4660.284 kb on + strandat 4660.866 kb on + strand, within Shewana3_3880

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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4,658,452 + Shewana3_3878 0.28 -0.1
4,658,470 + Shewana3_3878 0.31 +0.3
4,658,484 - Shewana3_3878 0.34 -0.2
4,658,551 + Shewana3_3878 0.47 +0.3
4,658,871 + -0.2
4,659,339 - +0.2
4,659,392 - -1.4
4,659,454 + Shewana3_3879 0.11 -1.6
4,659,562 + Shewana3_3879 0.24 -1.1
4,659,668 + Shewana3_3879 0.36 -1.3
4,659,697 - Shewana3_3879 0.40 -2.4
4,659,748 + Shewana3_3879 0.46 -2.2
4,659,800 - Shewana3_3879 0.52 -1.3
4,659,924 - Shewana3_3879 0.66 -0.9
4,660,021 + Shewana3_3879 0.78 -1.6
4,660,029 - Shewana3_3879 0.79 -1.7
4,660,206 + -1.4
4,660,246 + -0.9
4,660,284 + -0.2
4,660,284 + -0.9
4,660,866 + Shewana3_3880 0.30 -0.9

Or see this region's nucleotide sequence