Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3879
Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 1 mM |
---|---|---|---|---|---|
remove | |||||
4,658,452 | + | Shewana3_3878 | 0.28 | -0.1 | |
4,658,470 | + | Shewana3_3878 | 0.31 | +0.3 | |
4,658,484 | - | Shewana3_3878 | 0.34 | -0.2 | |
4,658,551 | + | Shewana3_3878 | 0.47 | +0.3 | |
4,658,871 | + | -0.2 | |||
4,659,339 | - | +0.2 | |||
4,659,392 | - | -1.4 | |||
4,659,454 | + | Shewana3_3879 | 0.11 | -1.6 | |
4,659,562 | + | Shewana3_3879 | 0.24 | -1.1 | |
4,659,668 | + | Shewana3_3879 | 0.36 | -1.3 | |
4,659,697 | - | Shewana3_3879 | 0.40 | -2.4 | |
4,659,748 | + | Shewana3_3879 | 0.46 | -2.2 | |
4,659,800 | - | Shewana3_3879 | 0.52 | -1.3 | |
4,659,924 | - | Shewana3_3879 | 0.66 | -0.9 | |
4,660,021 | + | Shewana3_3879 | 0.78 | -1.6 | |
4,660,029 | - | Shewana3_3879 | 0.79 | -1.7 | |
4,660,206 | + | -1.4 | |||
4,660,246 | + | -0.9 | |||
4,660,284 | + | -0.2 | |||
4,660,284 | + | -0.9 | |||
4,660,866 | + | Shewana3_3880 | 0.30 | -0.9 |
Or see this region's nucleotide sequence