Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3827

Experiment: syringaldehyde 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 1 mM
4,593,687	-		Shewana3_3826	0.24	+0.1
4,593,707	+		Shewana3_3826	0.26	+0.1
4,593,750	-		Shewana3_3826	0.30	+0.2
4,593,759	+		Shewana3_3826	0.30	-0.4
4,594,158	-		Shewana3_3826	0.66	-2.1
4,594,175	-		Shewana3_3826	0.67	-0.5
4,594,310	+		Shewana3_3826	0.79	+0.5
4,594,354	+		Shewana3_3826	0.83	-0.2
4,594,354	+		Shewana3_3826	0.83	+0.1
4,594,399	+		Shewana3_3826	0.87	+0.2
4,594,503	+				-0.0
4,594,503	-				-0.0
4,594,513	+				+0.2
4,594,585	+				-0.0
4,594,768	+				+0.9
4,594,768	+				-2.2
4,594,776	-				-0.4
4,594,776	-				-1.8
4,594,776	-				-0.6
4,594,776	-				-1.7
4,594,987	+		Shewana3_3827	0.12	-1.6
4,594,987	+		Shewana3_3827	0.12	-2.9
4,594,995	-		Shewana3_3827	0.13	-1.4
4,594,995	-		Shewana3_3827	0.13	-1.3
4,595,000	+		Shewana3_3827	0.13	-0.9
4,595,092	-		Shewana3_3827	0.16	-1.0
4,595,092	-		Shewana3_3827	0.16	-1.3
4,595,175	-		Shewana3_3827	0.20	-1.8
4,595,519	-		Shewana3_3827	0.33	-0.8
4,595,519	-		Shewana3_3827	0.33	-1.1
4,595,578	+		Shewana3_3827	0.35	-0.3
4,595,578	+		Shewana3_3827	0.35	-1.2
4,595,648	+		Shewana3_3827	0.38	-1.2
4,595,665	+		Shewana3_3827	0.39	-1.4
4,595,672	+		Shewana3_3827	0.39	-1.1
4,595,733	+		Shewana3_3827	0.41	-0.5
4,595,739	-		Shewana3_3827	0.41	-0.8
4,595,739	-		Shewana3_3827	0.41	-1.2
4,595,795	-		Shewana3_3827	0.44	-1.4
4,595,916	+		Shewana3_3827	0.48	-0.4
4,595,959	-		Shewana3_3827	0.50	-0.6
4,596,003	-		Shewana3_3827	0.52	-1.6
4,596,003	-		Shewana3_3827	0.52	-0.8
4,596,015	+		Shewana3_3827	0.52	-1.2
4,596,071	+		Shewana3_3827	0.54	-2.4
4,596,202	+		Shewana3_3827	0.59	-2.3
4,596,202	+		Shewana3_3827	0.59	-0.7
4,596,210	-		Shewana3_3827	0.60	-0.6
4,596,250	-		Shewana3_3827	0.61	-0.7
4,596,274	+		Shewana3_3827	0.62	-1.2
4,596,293	+		Shewana3_3827	0.63	-1.0
4,596,293	+		Shewana3_3827	0.63	-1.2
4,596,301	-		Shewana3_3827	0.63	-1.1
4,596,390	-		Shewana3_3827	0.66	-1.9
4,596,395	-		Shewana3_3827	0.67	-0.7
4,596,395	-		Shewana3_3827	0.67	+1.5
4,596,415	-		Shewana3_3827	0.67	-0.7
4,596,438	+		Shewana3_3827	0.68	-1.4
4,596,537	+		Shewana3_3827	0.72	-1.0
4,596,574	+		Shewana3_3827	0.74	-1.7
4,596,607	-		Shewana3_3827	0.75	-0.7
4,596,619	+		Shewana3_3827	0.75	-1.5
4,596,901	-		Shewana3_3827	0.86	-1.4
4,596,997	+		Shewana3_3827	0.90	-1.5
4,597,005	-				-1.7
4,597,106	+				-1.2
4,597,162	-				-1.7
4,597,188	+				-0.7
4,597,209	-				+0.0
4,597,313	+				+0.0
4,597,422	-				-1.5
4,597,552	+		Shewana3_3828	0.14	-1.4
4,597,560	-		Shewana3_3828	0.14	-0.6
4,597,567	+		Shewana3_3828	0.15	-0.9
4,597,764	-		Shewana3_3828	0.31	-1.6
4,597,966	-		Shewana3_3828	0.48	-0.6
4,597,969	+		Shewana3_3828	0.49	+0.1
4,598,006	+		Shewana3_3828	0.52	-1.5
4,598,072	+		Shewana3_3828	0.57	-1.1
4,598,191	+		Shewana3_3828	0.67	-3.4