Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3727 and Shewana3_3728 are separated by 59 nucleotides Shewana3_3728 and Shewana3_3729 are separated by 6 nucleotides Shewana3_3729 and Shewana3_3730 are separated by 3 nucleotides Shewana3_3730 and Shewana3_3731 are separated by 44 nucleotides Shewana3_3731 and Shewana3_3732 overlap by 1 nucleotides
Shewana3_3727: Shewana3_3727 - 2-octaprenylphenol hydroxylase (RefSeq), at 4,469,495 to 4,471,144
_3727
Shewana3_3728: Shewana3_3728 - twin arginine-targeting protein translocase (RefSeq), at 4,471,204 to 4,471,461
_3728
Shewana3_3729: Shewana3_3729 - twin-arginine translocation protein, TatB subunit (RefSeq), at 4,471,468 to 4,471,911
_3729
Shewana3_3730: Shewana3_3730 - Sec-independent protein translocase TatC (RefSeq), at 4,471,915 to 4,472,664
_3730
Shewana3_3731: Shewana3_3731 - hypothetical protein (RefSeq), at 4,472,709 to 4,473,239
_3731
Shewana3_3732: Shewana3_3732 - Sec-independent protein translocase TatD (RefSeq), at 4,473,239 to 4,474,042
_3732
Position (kb) 4471
4472
4473 Strain fitness (log2 ratio) -2
-1
0
1 at 4471.130 kb on - strand at 4471.354 kb on + strand, within Shewana3_3728 at 4471.486 kb on - strand at 4471.958 kb on + strand at 4472.257 kb on - strand, within Shewana3_3730 at 4472.465 kb on - strand, within Shewana3_3730 at 4472.547 kb on + strand, within Shewana3_3730 at 4472.736 kb on + strand at 4472.736 kb on + strand at 4472.744 kb on - strand at 4472.756 kb on + strand at 4472.756 kb on + strand at 4472.764 kb on - strand, within Shewana3_3731 at 4472.892 kb on + strand, within Shewana3_3731 at 4472.939 kb on - strand, within Shewana3_3731 at 4472.959 kb on - strand, within Shewana3_3731 at 4472.969 kb on - strand, within Shewana3_3731 at 4473.208 kb on + strand at 4473.215 kb on + strand at 4473.465 kb on + strand, within Shewana3_3732 at 4473.533 kb on + strand, within Shewana3_3732 at 4473.583 kb on - strand, within Shewana3_3732
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 4,471,130 - -2.1 4,471,354 + Shewana3_3728 0.58 -0.5 4,471,486 - -1.6 4,471,958 + -1.2 4,472,257 - Shewana3_3730 0.46 -1.6 4,472,465 - Shewana3_3730 0.73 -0.9 4,472,547 + Shewana3_3730 0.84 -0.5 4,472,736 + -0.3 4,472,736 + +0.0 4,472,744 - -0.0 4,472,756 + +0.2 4,472,756 + -1.5 4,472,764 - Shewana3_3731 0.10 -1.9 4,472,892 + Shewana3_3731 0.34 +0.1 4,472,939 - Shewana3_3731 0.43 -2.3 4,472,959 - Shewana3_3731 0.47 +0.2 4,472,969 - Shewana3_3731 0.49 -1.8 4,473,208 + +0.1 4,473,215 + +0.0 4,473,465 + Shewana3_3732 0.28 +0.1 4,473,533 + Shewana3_3732 0.37 +0.1 4,473,583 - Shewana3_3732 0.43 +0.1
Or see this region's nucleotide sequence