Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3688

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3687 and Shewana3_3688 are separated by 485 nucleotidesShewana3_3688 and Shewana3_3689 are separated by 178 nucleotides Shewana3_3687: Shewana3_3687 - short-chain dehydrogenase/reductase SDR (RefSeq), at 4,426,470 to 4,427,201 _3687 Shewana3_3688: Shewana3_3688 - cytochrome c family protein (RefSeq), at 4,427,687 to 4,428,016 _3688 Shewana3_3689: Shewana3_3689 - hypothetical protein (RefSeq), at 4,428,195 to 4,429,925 _3689 Position (kb) 4427 4428 4429Strain fitness (log2 ratio) -3 -2 -1 0 1at 4426.805 kb on + strand, within Shewana3_3687at 4426.871 kb on - strand, within Shewana3_3687at 4426.878 kb on + strand, within Shewana3_3687at 4426.895 kb on - strand, within Shewana3_3687at 4426.981 kb on + strand, within Shewana3_3687at 4427.012 kb on + strand, within Shewana3_3687at 4427.025 kb on - strand, within Shewana3_3687at 4427.066 kb on - strand, within Shewana3_3687at 4427.087 kb on - strand, within Shewana3_3687at 4427.203 kb on - strandat 4427.770 kb on - strand, within Shewana3_3688at 4427.963 kb on - strand, within Shewana3_3688at 4428.046 kb on + strandat 4428.054 kb on - strandat 4428.073 kb on - strandat 4428.119 kb on + strandat 4428.127 kb on - strandat 4428.127 kb on - strandat 4428.127 kb on - strandat 4428.204 kb on + strandat 4428.239 kb on + strandat 4428.247 kb on - strandat 4428.323 kb on - strandat 4428.356 kb on - strandat 4428.453 kb on + strand, within Shewana3_3689at 4428.461 kb on - strand, within Shewana3_3689at 4428.625 kb on - strand, within Shewana3_3689at 4428.699 kb on + strand, within Shewana3_3689at 4428.706 kb on - strand, within Shewana3_3689at 4428.761 kb on + strand, within Shewana3_3689at 4428.769 kb on + strand, within Shewana3_3689at 4428.769 kb on + strand, within Shewana3_3689at 4428.769 kb on + strand, within Shewana3_3689at 4428.769 kb on + strand, within Shewana3_3689at 4428.777 kb on - strand, within Shewana3_3689at 4428.827 kb on + strand, within Shewana3_3689at 4428.842 kb on + strand, within Shewana3_3689at 4428.847 kb on + strand, within Shewana3_3689at 4428.850 kb on - strand, within Shewana3_3689at 4428.855 kb on - strand, within Shewana3_3689at 4428.983 kb on - strand, within Shewana3_3689

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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4,426,805 + Shewana3_3687 0.46 -0.8
4,426,871 - Shewana3_3687 0.55 +0.3
4,426,878 + Shewana3_3687 0.56 -0.9
4,426,895 - Shewana3_3687 0.58 +0.2
4,426,981 + Shewana3_3687 0.70 -0.8
4,427,012 + Shewana3_3687 0.74 +0.2
4,427,025 - Shewana3_3687 0.76 +0.6
4,427,066 - Shewana3_3687 0.81 +0.2
4,427,087 - Shewana3_3687 0.84 +0.6
4,427,203 - -0.6
4,427,770 - Shewana3_3688 0.25 +0.3
4,427,963 - Shewana3_3688 0.84 -3.4
4,428,046 + -1.5
4,428,054 - -0.1
4,428,073 - -0.5
4,428,119 + +0.2
4,428,127 - +0.0
4,428,127 - -1.4
4,428,127 - +0.2
4,428,204 + +0.3
4,428,239 + -0.8
4,428,247 - +0.2
4,428,323 - +0.1
4,428,356 - +0.6
4,428,453 + Shewana3_3689 0.15 +0.0
4,428,461 - Shewana3_3689 0.15 +0.2
4,428,625 - Shewana3_3689 0.25 +0.2
4,428,699 + Shewana3_3689 0.29 +0.2
4,428,706 - Shewana3_3689 0.30 -0.1
4,428,761 + Shewana3_3689 0.33 -0.2
4,428,769 + Shewana3_3689 0.33 +0.1
4,428,769 + Shewana3_3689 0.33 +0.8
4,428,769 + Shewana3_3689 0.33 +0.0
4,428,769 + Shewana3_3689 0.33 -0.9
4,428,777 - Shewana3_3689 0.34 -0.0
4,428,827 + Shewana3_3689 0.37 -0.1
4,428,842 + Shewana3_3689 0.37 -0.2
4,428,847 + Shewana3_3689 0.38 +0.0
4,428,850 - Shewana3_3689 0.38 -0.4
4,428,855 - Shewana3_3689 0.38 +0.2
4,428,983 - Shewana3_3689 0.46 +0.0

Or see this region's nucleotide sequence