Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3622

Experiment: syringaldehyde 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 1 mM
4,348,022	+		Shewana3_3620	0.55	-0.3
4,348,025	-		Shewana3_3620	0.55	+0.2
4,348,087	+		Shewana3_3620	0.65	-0.7
4,348,220	-		Shewana3_3620	0.86	-0.0
4,348,715	-				-1.5
4,348,751	+		Shewana3_3621	0.12	-0.1
4,348,996	+				-0.5
4,348,999	-				-1.8
4,349,016	-				-0.2
4,349,022	-				-0.9
4,349,076	-				-0.8
4,349,095	-				-2.1
4,349,154	-		Shewana3_3622	0.13	-0.7
4,349,438	+		Shewana3_3622	0.39	-0.9
4,349,438	+		Shewana3_3622	0.39	-1.1
4,349,446	-		Shewana3_3622	0.39	-1.5
4,349,446	-		Shewana3_3622	0.39	-1.3
4,349,524	-		Shewana3_3622	0.47	-1.7
4,349,526	-		Shewana3_3622	0.47	-0.3
4,349,641	+		Shewana3_3622	0.57	-1.0
4,349,641	+		Shewana3_3622	0.57	-1.5
4,349,641	+		Shewana3_3622	0.57	-0.2
4,349,649	-		Shewana3_3622	0.58	-3.0
4,349,701	-		Shewana3_3622	0.63	-1.7
4,349,707	-		Shewana3_3622	0.63	-0.6
4,349,800	+		Shewana3_3622	0.72	-2.1
4,349,800	+		Shewana3_3622	0.72	-0.2
4,349,808	-		Shewana3_3622	0.72	-1.1
4,349,808	-		Shewana3_3622	0.72	-0.1
4,349,808	-		Shewana3_3622	0.72	-0.1
4,349,960	+		Shewana3_3622	0.86	-1.2
4,350,002	+		Shewana3_3622	0.90	-0.5
4,350,122	+				-0.0
4,350,130	-				-1.2
4,350,134	+				+0.3
4,350,134	-				+0.0
4,350,411	+				-0.2
4,350,435	+				+0.1
4,350,435	+				+1.5
4,350,443	-				-0.5
4,350,453	+				-0.1
4,350,461	-				-0.2
4,350,461	-				+0.8
4,350,461	-				+0.2
4,350,465	+				-2.1
4,350,507	+				-0.8
4,350,536	+				-0.2
4,350,554	+				-0.1
4,350,564	+				+0.5
4,350,564	+				-0.1
4,350,564	+				-0.3
4,350,572	-				-0.4
4,350,714	+				-0.3
4,350,714	+				-0.1
4,350,714	+				-0.0
4,350,714	+				-0.1
4,350,714	+				-0.0
4,350,714	+				-0.8
4,350,714	+				-0.3
4,350,714	+				-0.8
4,350,714	+				-0.3
4,350,714	+				-0.3
4,350,714	+				-0.0
4,350,714	+				-0.3
4,350,714	+				+0.0
4,350,721	+				-0.2
4,350,722	-				+0.3
4,350,722	-				-0.2
4,350,722	-				-0.0
4,350,722	-				+0.2
4,350,722	-				-0.4
4,350,722	-				+0.7
4,350,722	-				-0.2
4,350,722	-				-0.4
4,350,722	-				-0.8
4,350,722	-				+1.1
4,350,722	-				+0.3
4,350,722	-				+0.3
4,350,722	-				-0.3
4,350,722	-				+0.1
4,350,722	-				-0.7
4,350,722	-				+0.2
4,350,724	-				-0.1
4,350,724	-				+0.5
4,350,733	+				-1.1
4,350,747	+		Shewana3_3623	0.10	-0.2
4,350,755	-		Shewana3_3623	0.11	-0.2
4,350,804	-		Shewana3_3623	0.17	-0.1
4,350,804	-		Shewana3_3623	0.17	+0.1
4,350,822	-		Shewana3_3623	0.18	-0.3
4,350,845	+		Shewana3_3623	0.21	-0.5
4,350,845	-		Shewana3_3623	0.21	-1.3
4,350,845	-		Shewana3_3623	0.21	-0.2
4,350,847	+		Shewana3_3623	0.21	-0.5
4,350,849	+		Shewana3_3623	0.21	+0.4
4,350,855	-		Shewana3_3623	0.22	-0.2
4,350,855	-		Shewana3_3623	0.22	+0.3
4,350,855	-		Shewana3_3623	0.22	-1.0
4,350,855	-		Shewana3_3623	0.22	-0.7
4,350,871	+		Shewana3_3623	0.24	-2.1
4,350,871	+		Shewana3_3623	0.24	+0.0
4,350,871	+		Shewana3_3623	0.24	-0.8
4,350,879	-		Shewana3_3623	0.25	-0.2
4,350,879	-		Shewana3_3623	0.25	+1.4
4,350,879	-		Shewana3_3623	0.25	-0.2
4,350,882	+		Shewana3_3623	0.25	-1.3
4,350,883	+		Shewana3_3623	0.25	-0.3
4,350,890	-		Shewana3_3623	0.26	-0.2
4,350,890	-		Shewana3_3623	0.26	-0.4
4,350,890	-		Shewana3_3623	0.26	-0.5
4,350,891	-		Shewana3_3623	0.26	-0.4
4,350,891	-		Shewana3_3623	0.26	-0.2
4,350,903	+		Shewana3_3623	0.27	+0.7
4,351,003	-		Shewana3_3623	0.38	-1.4
4,351,003	-		Shewana3_3623	0.38	+1.1
4,351,004	-		Shewana3_3623	0.38	-0.4
4,351,011	+		Shewana3_3623	0.39	-0.4
4,351,023	+		Shewana3_3623	0.40	+0.9
4,351,041	-		Shewana3_3623	0.42	-0.2
4,351,071	-		Shewana3_3623	0.45	-1.1
4,351,073	+		Shewana3_3623	0.46	+0.2
4,351,073	+		Shewana3_3623	0.46	-1.7
4,351,073	+		Shewana3_3623	0.46	-1.6
4,351,081	-		Shewana3_3623	0.46	+0.5
4,351,081	-		Shewana3_3623	0.46	-0.7
4,351,081	-		Shewana3_3623	0.46	-1.3
4,351,083	+		Shewana3_3623	0.47	+1.5
4,351,083	+		Shewana3_3623	0.47	+0.5
4,351,083	+		Shewana3_3623	0.47	-2.2
4,351,083	+		Shewana3_3623	0.47	-2.2
4,351,091	-		Shewana3_3623	0.47	-0.8
4,351,091	-		Shewana3_3623	0.47	+0.1