Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3594 and Shewana3_3595 are separated by 197 nucleotides Shewana3_3595 and Shewana3_3596 are separated by 385 nucleotides Shewana3_3596 and Shewana3_3597 are separated by 65 nucleotides
Shewana3_3594: Shewana3_3594 - peptidase M28 (RefSeq), at 4,316,530 to 4,317,570
_3594
Shewana3_3595: Shewana3_3595 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 4,317,768 to 4,319,627
_3595
Shewana3_3596: Shewana3_3596 - hypothetical protein (RefSeq), at 4,320,013 to 4,320,384
_3596
Shewana3_3597: Shewana3_3597 - major facilitator transporter (RefSeq), at 4,320,450 to 4,321,646
_3597
Position (kb)
4317
4318
4319
4320 Strain fitness (log2 ratio)
-2
-1
0
1 at 4316.794 kb on - strand, within Shewana3_3594 at 4316.827 kb on - strand, within Shewana3_3594 at 4317.074 kb on - strand, within Shewana3_3594 at 4317.122 kb on + strand, within Shewana3_3594 at 4317.342 kb on + strand, within Shewana3_3594 at 4317.350 kb on - strand, within Shewana3_3594 at 4317.364 kb on + strand, within Shewana3_3594 at 4317.396 kb on + strand, within Shewana3_3594 at 4317.404 kb on - strand, within Shewana3_3594 at 4317.874 kb on + strand at 4318.168 kb on + strand, within Shewana3_3595 at 4318.202 kb on + strand, within Shewana3_3595 at 4318.319 kb on + strand, within Shewana3_3595 at 4318.467 kb on + strand, within Shewana3_3595 at 4318.835 kb on + strand, within Shewana3_3595 at 4318.888 kb on + strand, within Shewana3_3595 at 4318.888 kb on + strand, within Shewana3_3595 at 4319.116 kb on + strand, within Shewana3_3595 at 4319.552 kb on + strand at 4319.622 kb on + strand at 4319.901 kb on - strand at 4319.957 kb on + strand at 4319.984 kb on + strand at 4320.128 kb on + strand, within Shewana3_3596 at 4320.128 kb on + strand, within Shewana3_3596 at 4320.128 kb on + strand, within Shewana3_3596 at 4320.197 kb on - strand, within Shewana3_3596 at 4320.299 kb on + strand, within Shewana3_3596 at 4320.328 kb on - strand, within Shewana3_3596 at 4320.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 4,316,794 - Shewana3_3594 0.25 +0.5 4,316,827 - Shewana3_3594 0.29 +0.2 4,317,074 - Shewana3_3594 0.52 -0.4 4,317,122 + Shewana3_3594 0.57 -0.1 4,317,342 + Shewana3_3594 0.78 -0.4 4,317,350 - Shewana3_3594 0.79 +0.0 4,317,364 + Shewana3_3594 0.80 -0.3 4,317,396 + Shewana3_3594 0.83 -0.9 4,317,404 - Shewana3_3594 0.84 +0.2 4,317,874 + -0.9 4,318,168 + Shewana3_3595 0.22 -1.5 4,318,202 + Shewana3_3595 0.23 -1.2 4,318,319 + Shewana3_3595 0.30 -2.3 4,318,467 + Shewana3_3595 0.38 -1.9 4,318,835 + Shewana3_3595 0.57 -0.1 4,318,888 + Shewana3_3595 0.60 -0.8 4,318,888 + Shewana3_3595 0.60 -0.9 4,319,116 + Shewana3_3595 0.72 -0.3 4,319,552 + +0.1 4,319,622 + +0.1 4,319,901 - -0.3 4,319,957 + -0.2 4,319,984 + -1.3 4,320,128 + Shewana3_3596 0.31 -0.1 4,320,128 + Shewana3_3596 0.31 -1.0 4,320,128 + Shewana3_3596 0.31 +0.3 4,320,197 - Shewana3_3596 0.49 -0.3 4,320,299 + Shewana3_3596 0.77 +0.3 4,320,328 - Shewana3_3596 0.85 -0.1 4,320,463 - +0.2
Or see this region's nucleotide sequence