Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3568

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgroEL and groES are separated by 57 nucleotidesgroES and Shewana3_3569 are separated by 227 nucleotides Shewana3_3567: groEL - chaperonin GroEL (RefSeq), at 4,278,553 to 4,280,190 groEL Shewana3_3568: groES - co-chaperonin GroES (RefSeq), at 4,280,248 to 4,280,538 groES Shewana3_3569: Shewana3_3569 - MATE efflux family protein (RefSeq), at 4,280,766 to 4,282,124 _3569 Position (kb) 4280 4281Strain fitness (log2 ratio) -3 -2 -1 0 1at 4280.781 kb on + strandat 4281.009 kb on + strand, within Shewana3_3569at 4281.072 kb on - strand, within Shewana3_3569at 4281.072 kb on - strand, within Shewana3_3569at 4281.133 kb on + strand, within Shewana3_3569at 4281.223 kb on + strand, within Shewana3_3569at 4281.369 kb on + strand, within Shewana3_3569

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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4,280,781 + -3.5
4,281,009 + Shewana3_3569 0.18 -1.0
4,281,072 - Shewana3_3569 0.23 -3.0
4,281,072 - Shewana3_3569 0.23 -2.6
4,281,133 + Shewana3_3569 0.27 -2.6
4,281,223 + Shewana3_3569 0.34 -0.7
4,281,369 + Shewana3_3569 0.44 -1.6

Or see this region's nucleotide sequence