Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3411 and Shewana3_3412 are separated by 401 nucleotides Shewana3_3412 and Shewana3_3413 are separated by 14 nucleotides
Shewana3_3411: Shewana3_3411 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 4,079,364 to 4,081,871
_3411
Shewana3_3412: Shewana3_3412 - curlin-associated protein (RefSeq), at 4,082,273 to 4,082,692
_3412
Shewana3_3413: Shewana3_3413 - curlin-associated protein (RefSeq), at 4,082,707 to 4,084,215
_3413
Position (kb)
4082
4083 Strain fitness (log2 ratio)
-1
0
1 at 4081.332 kb on - strand, within Shewana3_3411 at 4081.341 kb on + strand, within Shewana3_3411 at 4081.344 kb on - strand, within Shewana3_3411 at 4081.464 kb on + strand, within Shewana3_3411 at 4081.627 kb on - strand at 4081.627 kb on - strand at 4081.746 kb on + strand at 4081.882 kb on + strand at 4082.280 kb on + strand at 4082.303 kb on - strand at 4082.370 kb on - strand, within Shewana3_3412 at 4082.495 kb on + strand, within Shewana3_3412 at 4082.694 kb on - strand at 4082.801 kb on + strand at 4082.809 kb on - strand at 4082.809 kb on - strand at 4082.966 kb on - strand, within Shewana3_3413 at 4083.078 kb on - strand, within Shewana3_3413 at 4083.272 kb on + strand, within Shewana3_3413 at 4083.272 kb on + strand, within Shewana3_3413 at 4083.333 kb on + strand, within Shewana3_3413 at 4083.357 kb on - strand, within Shewana3_3413 at 4083.479 kb on - strand, within Shewana3_3413 at 4083.534 kb on - strand, within Shewana3_3413 at 4083.641 kb on - strand, within Shewana3_3413
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 4,081,332 - Shewana3_3411 0.78 +0.1 4,081,341 + Shewana3_3411 0.79 +0.3 4,081,344 - Shewana3_3411 0.79 -0.3 4,081,464 + Shewana3_3411 0.84 +0.5 4,081,627 - +0.4 4,081,627 - -0.5 4,081,746 + -0.1 4,081,882 + -0.1 4,082,280 + +0.1 4,082,303 - +0.2 4,082,370 - Shewana3_3412 0.23 +0.8 4,082,495 + Shewana3_3412 0.53 +0.1 4,082,694 - +0.3 4,082,801 + -0.2 4,082,809 - -0.8 4,082,809 - +0.2 4,082,966 - Shewana3_3413 0.17 +0.2 4,083,078 - Shewana3_3413 0.25 +0.2 4,083,272 + Shewana3_3413 0.37 +0.6 4,083,272 + Shewana3_3413 0.37 -0.0 4,083,333 + Shewana3_3413 0.41 +0.2 4,083,357 - Shewana3_3413 0.43 +0.4 4,083,479 - Shewana3_3413 0.51 -0.7 4,083,534 - Shewana3_3413 0.55 -1.1 4,083,641 - Shewana3_3413 0.62 -0.1
Or see this region's nucleotide sequence