Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3267

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3266 and Shewana3_3267 are separated by 835 nucleotidesShewana3_3267 and Shewana3_3268 are separated by 536 nucleotidesShewana3_3268 and Shewana3_3269 are separated by 53 nucleotides Shewana3_3266: Shewana3_3266 - hypothetical protein (RefSeq), at 3,908,278 to 3,908,571 _3266 Shewana3_3267: Shewana3_3267 - hypothetical protein (RefSeq), at 3,909,407 to 3,909,631 _3267 Shewana3_3268: Shewana3_3268 - hypothetical protein (RefSeq), at 3,910,168 to 3,910,290 _3268 Shewana3_3269: Shewana3_3269 - hypothetical protein (RefSeq), at 3,910,344 to 3,910,727 _3269 Position (kb) 3909 3910Strain fitness (log2 ratio) -1 0 1at 3908.498 kb on + strand, within Shewana3_3266at 3908.608 kb on - strandat 3908.652 kb on - strandat 3908.655 kb on + strandat 3908.722 kb on - strandat 3908.850 kb on - strandat 3908.893 kb on - strandat 3909.062 kb on + strandat 3909.062 kb on + strandat 3909.174 kb on - strandat 3909.198 kb on + strandat 3909.307 kb on + strandat 3909.343 kb on + strandat 3909.414 kb on + strandat 3909.414 kb on + strandat 3909.494 kb on - strand, within Shewana3_3267at 3909.799 kb on + strandat 3909.968 kb on + strandat 3910.143 kb on + strandat 3910.205 kb on + strand, within Shewana3_3268at 3910.208 kb on + strand, within Shewana3_3268at 3910.390 kb on + strand, within Shewana3_3269at 3910.506 kb on + strand, within Shewana3_3269

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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3,908,498 + Shewana3_3266 0.75 +0.6
3,908,608 - +0.1
3,908,652 - -0.1
3,908,655 + +1.4
3,908,722 - -0.9
3,908,850 - +0.2
3,908,893 - +0.1
3,909,062 + +0.4
3,909,062 + -0.2
3,909,174 - -0.9
3,909,198 + +0.4
3,909,307 + +0.1
3,909,343 + -0.5
3,909,414 + -0.3
3,909,414 + +0.0
3,909,494 - Shewana3_3267 0.39 +0.6
3,909,799 + +0.0
3,909,968 + +0.4
3,910,143 + -0.6
3,910,205 + Shewana3_3268 0.30 -0.2
3,910,208 + Shewana3_3268 0.33 -0.2
3,910,390 + Shewana3_3269 0.12 -1.2
3,910,506 + Shewana3_3269 0.42 -0.1

Or see this region's nucleotide sequence