Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3266 and Shewana3_3267 are separated by 835 nucleotides Shewana3_3267 and Shewana3_3268 are separated by 536 nucleotides Shewana3_3268 and Shewana3_3269 are separated by 53 nucleotides
Shewana3_3266: Shewana3_3266 - hypothetical protein (RefSeq), at 3,908,278 to 3,908,571
_3266
Shewana3_3267: Shewana3_3267 - hypothetical protein (RefSeq), at 3,909,407 to 3,909,631
_3267
Shewana3_3268: Shewana3_3268 - hypothetical protein (RefSeq), at 3,910,168 to 3,910,290
_3268
Shewana3_3269: Shewana3_3269 - hypothetical protein (RefSeq), at 3,910,344 to 3,910,727
_3269
Position (kb)
3909
3910 Strain fitness (log2 ratio)
-1
0
1 at 3908.498 kb on + strand, within Shewana3_3266 at 3908.608 kb on - strand at 3908.652 kb on - strand at 3908.655 kb on + strand at 3908.722 kb on - strand at 3908.850 kb on - strand at 3908.893 kb on - strand at 3909.062 kb on + strand at 3909.062 kb on + strand at 3909.174 kb on - strand at 3909.198 kb on + strand at 3909.307 kb on + strand at 3909.343 kb on + strand at 3909.414 kb on + strand at 3909.414 kb on + strand at 3909.494 kb on - strand, within Shewana3_3267 at 3909.799 kb on + strand at 3909.968 kb on + strand at 3910.143 kb on + strand at 3910.205 kb on + strand, within Shewana3_3268 at 3910.208 kb on + strand, within Shewana3_3268 at 3910.390 kb on + strand, within Shewana3_3269 at 3910.506 kb on + strand, within Shewana3_3269
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 3,908,498 + Shewana3_3266 0.75 +0.6 3,908,608 - +0.1 3,908,652 - -0.1 3,908,655 + +1.4 3,908,722 - -0.9 3,908,850 - +0.2 3,908,893 - +0.1 3,909,062 + +0.4 3,909,062 + -0.2 3,909,174 - -0.9 3,909,198 + +0.4 3,909,307 + +0.1 3,909,343 + -0.5 3,909,414 + -0.3 3,909,414 + +0.0 3,909,494 - Shewana3_3267 0.39 +0.6 3,909,799 + +0.0 3,909,968 + +0.4 3,910,143 + -0.6 3,910,205 + Shewana3_3268 0.30 -0.2 3,910,208 + Shewana3_3268 0.33 -0.2 3,910,390 + Shewana3_3269 0.12 -1.2 3,910,506 + Shewana3_3269 0.42 -0.1
Or see this region's nucleotide sequence