Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3082

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3080 and Shewana3_3081 are separated by 49 nucleotidesShewana3_3081 and Shewana3_3082 are separated by 261 nucleotidesShewana3_3082 and Shewana3_3083 are separated by 186 nucleotides Shewana3_3080: Shewana3_3080 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 3,693,760 to 3,694,269 _3080 Shewana3_3081: Shewana3_3081 - dihydroneopterin aldolase (RefSeq), at 3,694,319 to 3,694,669 _3081 Shewana3_3082: Shewana3_3082 - putative glycerol-3-phosphate acyltransferase PlsY (RefSeq), at 3,694,931 to 3,695,542 _3082 Shewana3_3083: Shewana3_3083 - O-sialoglycoprotein endopeptidase (RefSeq), at 3,695,729 to 3,696,745 _3083 Position (kb) 3694 3695 3696Strain fitness (log2 ratio) -1 0 1at 3694.095 kb on - strand, within Shewana3_3080at 3694.139 kb on + strand, within Shewana3_3080at 3694.149 kb on + strand, within Shewana3_3080at 3694.195 kb on + strand, within Shewana3_3080at 3694.214 kb on - strand, within Shewana3_3080at 3694.245 kb on - strandat 3694.785 kb on - strandat 3695.216 kb on - strand, within Shewana3_3082at 3695.392 kb on + strand, within Shewana3_3082at 3695.392 kb on + strand, within Shewana3_3082at 3695.502 kb on + strandat 3695.503 kb on + strandat 3695.503 kb on - strandat 3695.511 kb on - strandat 3695.616 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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3,694,095 - Shewana3_3080 0.66 -0.1
3,694,139 + Shewana3_3080 0.74 +0.4
3,694,149 + Shewana3_3080 0.76 -1.0
3,694,195 + Shewana3_3080 0.85 -1.2
3,694,214 - Shewana3_3080 0.89 +0.3
3,694,245 - +0.3
3,694,785 - -1.0
3,695,216 - Shewana3_3082 0.47 -0.2
3,695,392 + Shewana3_3082 0.75 -0.8
3,695,392 + Shewana3_3082 0.75 -1.4
3,695,502 + -0.5
3,695,503 + -0.3
3,695,503 - +0.0
3,695,511 - -0.6
3,695,616 + -0.1

Or see this region's nucleotide sequence