Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3080 and Shewana3_3081 are separated by 49 nucleotides Shewana3_3081 and Shewana3_3082 are separated by 261 nucleotides Shewana3_3082 and Shewana3_3083 are separated by 186 nucleotides
Shewana3_3080: Shewana3_3080 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 3,693,760 to 3,694,269
_3080
Shewana3_3081: Shewana3_3081 - dihydroneopterin aldolase (RefSeq), at 3,694,319 to 3,694,669
_3081
Shewana3_3082: Shewana3_3082 - putative glycerol-3-phosphate acyltransferase PlsY (RefSeq), at 3,694,931 to 3,695,542
_3082
Shewana3_3083: Shewana3_3083 - O-sialoglycoprotein endopeptidase (RefSeq), at 3,695,729 to 3,696,745
_3083
Position (kb)
3694
3695
3696 Strain fitness (log2 ratio)
-1
0
1 at 3694.095 kb on - strand, within Shewana3_3080 at 3694.139 kb on + strand, within Shewana3_3080 at 3694.149 kb on + strand, within Shewana3_3080 at 3694.195 kb on + strand, within Shewana3_3080 at 3694.214 kb on - strand, within Shewana3_3080 at 3694.245 kb on - strand at 3694.785 kb on - strand at 3695.216 kb on - strand, within Shewana3_3082 at 3695.392 kb on + strand, within Shewana3_3082 at 3695.392 kb on + strand, within Shewana3_3082 at 3695.502 kb on + strand at 3695.503 kb on + strand at 3695.503 kb on - strand at 3695.511 kb on - strand at 3695.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 3,694,095 - Shewana3_3080 0.66 -0.1 3,694,139 + Shewana3_3080 0.74 +0.4 3,694,149 + Shewana3_3080 0.76 -1.0 3,694,195 + Shewana3_3080 0.85 -1.2 3,694,214 - Shewana3_3080 0.89 +0.3 3,694,245 - +0.3 3,694,785 - -1.0 3,695,216 - Shewana3_3082 0.47 -0.2 3,695,392 + Shewana3_3082 0.75 -0.8 3,695,392 + Shewana3_3082 0.75 -1.4 3,695,502 + -0.5 3,695,503 + -0.3 3,695,503 - +0.0 3,695,511 - -0.6 3,695,616 + -0.1
Or see this region's nucleotide sequence