Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2996 and Shewana3_2997 are separated by 33 nucleotides Shewana3_2997 and Shewana3_2998 are separated by 122 nucleotides Shewana3_2998 and Shewana3_2999 are separated by 69 nucleotides
Shewana3_2996: Shewana3_2996 - band 7 protein (RefSeq), at 3,601,129 to 3,602,907
_2996
Shewana3_2997: Shewana3_2997 - hypothetical protein (RefSeq), at 3,602,941 to 3,603,576
_2997
Shewana3_2998: Shewana3_2998 - hypothetical protein (RefSeq), at 3,603,699 to 3,604,265
_2998
Shewana3_2999: Shewana3_2999 - peptidase M32, carboxypeptidase Taq metallopeptidase (RefSeq), at 3,604,335 to 3,605,840
_2999
Position (kb)
3602
3603
3604 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3602.167 kb on - strand, within Shewana3_2996 at 3602.207 kb on + strand, within Shewana3_2996 at 3602.284 kb on + strand, within Shewana3_2996 at 3602.334 kb on + strand, within Shewana3_2996 at 3602.396 kb on + strand, within Shewana3_2996 at 3602.540 kb on + strand, within Shewana3_2996 at 3602.566 kb on + strand, within Shewana3_2996 at 3602.763 kb on - strand at 3602.825 kb on + strand at 3603.084 kb on - strand, within Shewana3_2997 at 3603.092 kb on + strand, within Shewana3_2997 at 3603.471 kb on - strand, within Shewana3_2997 at 3603.477 kb on - strand, within Shewana3_2997 at 3603.495 kb on - strand, within Shewana3_2997 at 3603.523 kb on + strand at 3603.645 kb on - strand at 3603.892 kb on + strand, within Shewana3_2998 at 3603.945 kb on + strand, within Shewana3_2998 at 3604.068 kb on - strand, within Shewana3_2998 at 3604.090 kb on - strand, within Shewana3_2998 at 3604.114 kb on - strand, within Shewana3_2998 at 3604.117 kb on + strand, within Shewana3_2998 at 3604.229 kb on - strand at 3604.523 kb on + strand, within Shewana3_2999
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 3,602,167 - Shewana3_2996 0.58 -1.2 3,602,207 + Shewana3_2996 0.61 -2.2 3,602,284 + Shewana3_2996 0.65 +1.4 3,602,334 + Shewana3_2996 0.68 -0.2 3,602,396 + Shewana3_2996 0.71 -0.4 3,602,540 + Shewana3_2996 0.79 -0.6 3,602,566 + Shewana3_2996 0.81 -2.1 3,602,763 - -0.3 3,602,825 + +1.4 3,603,084 - Shewana3_2997 0.22 +0.6 3,603,092 + Shewana3_2997 0.24 -1.6 3,603,471 - Shewana3_2997 0.83 +1.0 3,603,477 - Shewana3_2997 0.84 +1.8 3,603,495 - Shewana3_2997 0.87 -0.2 3,603,523 + -1.8 3,603,645 - -0.4 3,603,892 + Shewana3_2998 0.34 +0.4 3,603,945 + Shewana3_2998 0.43 -0.2 3,604,068 - Shewana3_2998 0.65 -0.3 3,604,090 - Shewana3_2998 0.69 -0.5 3,604,114 - Shewana3_2998 0.73 -0.2 3,604,117 + Shewana3_2998 0.74 -0.1 3,604,229 - -0.1 3,604,523 + Shewana3_2999 0.12 -0.3
Or see this region's nucleotide sequence