Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2954

Experiment: syringaldehyde 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 1 mM
3,546,806	+		Shewana3_2953	0.35	+0.6
3,546,811	+		Shewana3_2953	0.35	+0.5
3,546,851	-		Shewana3_2953	0.38	-0.6
3,546,867	+		Shewana3_2953	0.40	-0.3
3,546,870	-		Shewana3_2953	0.40	-0.3
3,546,875	-		Shewana3_2953	0.40	-2.3
3,546,949	+		Shewana3_2953	0.46	+0.2
3,547,051	+		Shewana3_2953	0.55	-0.2
3,547,051	+		Shewana3_2953	0.55	+0.4
3,547,059	-		Shewana3_2953	0.55	-0.2
3,547,086	+		Shewana3_2953	0.58	+0.6
3,547,105	+		Shewana3_2953	0.59	+0.4
3,547,269	+		Shewana3_2953	0.73	+1.4
3,547,277	-		Shewana3_2953	0.73	-0.6
3,547,346	-		Shewana3_2953	0.79	-0.0
3,547,358	+		Shewana3_2953	0.80	-1.0
3,547,393	+		Shewana3_2953	0.83	-0.2
3,547,399	+		Shewana3_2953	0.83	-0.9
3,547,401	-		Shewana3_2953	0.83	-0.3
3,547,401	-		Shewana3_2953	0.83	+0.9
3,547,407	-		Shewana3_2953	0.84	-0.8
3,547,430	+		Shewana3_2953	0.86	-0.8
3,547,456	+		Shewana3_2953	0.88	+0.1
3,547,464	-		Shewana3_2953	0.88	-1.1
3,547,469	-		Shewana3_2953	0.89	-2.1
3,547,492	+				-0.2
3,547,492	+				-0.9
3,547,492	+				-2.9
3,547,627	+				-0.1
3,547,656	-				-1.6
3,547,658	+				+1.4
3,547,707	+				-1.2
3,547,707	+				-0.2
3,547,709	+				-0.6
3,547,709	+				-0.2
3,547,709	+				-1.0
3,547,709	+				+0.4
3,547,709	+				-0.3
3,547,709	+				-0.2
3,547,715	-		Shewana3_2954	0.10	+0.2
3,547,717	+		Shewana3_2954	0.11	-0.6
3,547,717	-		Shewana3_2954	0.11	-0.1
3,547,717	-		Shewana3_2954	0.11	-0.5
3,547,717	-		Shewana3_2954	0.11	-1.5
3,547,725	-		Shewana3_2954	0.12	-0.2
3,547,763	+		Shewana3_2954	0.16	-1.0
3,547,768	+		Shewana3_2954	0.17	+0.9
3,547,825	-		Shewana3_2954	0.24	-1.5
3,547,828	+		Shewana3_2954	0.24	+0.5
3,547,894	+		Shewana3_2954	0.33	+0.4
3,547,948	+		Shewana3_2954	0.39	-1.2
3,547,955	+		Shewana3_2954	0.40	-1.0
3,547,983	-		Shewana3_2954	0.44	+0.0
3,547,996	+		Shewana3_2954	0.45	+0.1
3,548,028	+		Shewana3_2954	0.49	+1.4
3,548,045	-		Shewana3_2954	0.51	-2.6
3,548,148	+		Shewana3_2954	0.64	-1.0
3,548,156	-		Shewana3_2954	0.65	-2.0
3,548,208	+		Shewana3_2954	0.71	-2.6
3,548,213	+		Shewana3_2954	0.72	-1.6
3,548,216	-		Shewana3_2954	0.72	-1.2
3,548,304	+		Shewana3_2954	0.83	+1.4
3,548,309	-		Shewana3_2954	0.84	-0.2
3,548,361	+				+0.2
3,548,377	-				-1.4
3,548,380	+				+1.4
3,548,388	-				+0.4
3,548,388	-				-0.2
3,548,388	-				+0.4
3,548,427	-				-0.6
3,548,500	+				+0.1
3,548,500	+				+0.5
3,548,500	+				-0.0
3,548,500	+				+0.5
3,548,500	+				+0.6
3,548,500	+				-0.6
3,548,500	+				-0.1
3,548,500	+				+0.2
3,548,500	+				+1.3
3,548,508	-				+0.4
3,548,508	-				-0.6
3,548,508	-				-0.6
3,548,508	-				-0.6
3,548,508	-				+0.9
3,548,535	+				-0.8
3,548,608	+				-0.4
3,548,637	+				+0.6
3,548,664	+				+0.1
3,548,670	+				+0.4
3,548,712	-				-0.1
3,548,729	+				-0.5
3,549,054	+				+1.4
3,549,057	-				-1.2
3,549,134	+		Shewana3_2955	0.21	-2.2
3,549,195	-		Shewana3_2955	0.31	-0.2