Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2916 and Shewana3_2917 overlap by 1 nucleotides Shewana3_2917 and Shewana3_2918 overlap by 1 nucleotides Shewana3_2918 and Shewana3_2919 overlap by 4 nucleotides
Shewana3_2916: Shewana3_2916 - hypothetical protein (RefSeq), at 3,491,653 to 3,494,322
_2916
Shewana3_2917: Shewana3_2917 - hypothetical protein (RefSeq), at 3,494,322 to 3,494,999
_2917
Shewana3_2918: Shewana3_2918 - hypothetical protein (RefSeq), at 3,494,999 to 3,495,436
_2918
Shewana3_2919: Shewana3_2919 - DNA helicase/exodeoxyribonuclease V, alpha subunit (RefSeq), at 3,495,433 to 3,497,598
_2919
Position (kb)
3494
3495 Strain fitness (log2 ratio)
-2
-1
0
1 at 3493.388 kb on + strand, within Shewana3_2916 at 3493.403 kb on + strand, within Shewana3_2916 at 3493.411 kb on - strand, within Shewana3_2916 at 3493.478 kb on + strand, within Shewana3_2916 at 3493.486 kb on - strand, within Shewana3_2916 at 3493.711 kb on + strand, within Shewana3_2916 at 3493.860 kb on + strand, within Shewana3_2916 at 3494.255 kb on + strand at 3494.467 kb on - strand, within Shewana3_2917 at 3494.528 kb on + strand, within Shewana3_2917 at 3494.530 kb on + strand, within Shewana3_2917 at 3494.561 kb on + strand, within Shewana3_2917 at 3494.561 kb on + strand, within Shewana3_2917 at 3494.603 kb on + strand, within Shewana3_2917 at 3494.611 kb on - strand, within Shewana3_2917 at 3494.644 kb on + strand, within Shewana3_2917 at 3494.686 kb on - strand, within Shewana3_2917 at 3494.925 kb on + strand, within Shewana3_2917 at 3495.197 kb on - strand, within Shewana3_2918 at 3495.218 kb on - strand, within Shewana3_2918 at 3495.442 kb on + strand at 3495.623 kb on - strand at 3495.624 kb on + strand at 3495.632 kb on - strand at 3495.642 kb on + strand at 3495.658 kb on - strand, within Shewana3_2919 at 3495.768 kb on + strand, within Shewana3_2919 at 3495.892 kb on + strand, within Shewana3_2919
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 3,493,388 + Shewana3_2916 0.65 -0.1 3,493,403 + Shewana3_2916 0.66 -1.5 3,493,411 - Shewana3_2916 0.66 -1.0 3,493,478 + Shewana3_2916 0.68 -0.2 3,493,486 - Shewana3_2916 0.69 -0.2 3,493,711 + Shewana3_2916 0.77 +0.5 3,493,860 + Shewana3_2916 0.83 -0.9 3,494,255 + +0.2 3,494,467 - Shewana3_2917 0.21 +1.4 3,494,528 + Shewana3_2917 0.30 +0.7 3,494,530 + Shewana3_2917 0.31 -0.2 3,494,561 + Shewana3_2917 0.35 +0.1 3,494,561 + Shewana3_2917 0.35 +0.1 3,494,603 + Shewana3_2917 0.41 -2.2 3,494,611 - Shewana3_2917 0.43 -0.6 3,494,644 + Shewana3_2917 0.47 +0.1 3,494,686 - Shewana3_2917 0.54 -0.6 3,494,925 + Shewana3_2917 0.89 -0.9 3,495,197 - Shewana3_2918 0.45 -0.2 3,495,218 - Shewana3_2918 0.50 +0.4 3,495,442 + +0.2 3,495,623 - -0.1 3,495,624 + +0.4 3,495,632 - -1.1 3,495,642 + +0.3 3,495,658 - Shewana3_2919 0.10 -1.3 3,495,768 + Shewana3_2919 0.15 +0.4 3,495,892 + Shewana3_2919 0.21 +0.5
Or see this region's nucleotide sequence