Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt motB and Shewana3_2898 are separated by 3 nucleotides Shewana3_2898 and Shewana3_2899 are separated by 314 nucleotides Shewana3_2899 and Shewana3_2900 are separated by 2 nucleotides
Shewana3_2897: motB - flagellar motor protein MotB (RefSeq), at 3,466,819 to 3,467,739
motB
Shewana3_2898: Shewana3_2898 - flagellar motor protein PomA (RefSeq), at 3,467,743 to 3,468,510
_2898
Shewana3_2899: Shewana3_2899 - exodeoxyribonuclease VII small subunit (RefSeq), at 3,468,825 to 3,469,064
_2899
Shewana3_2900: Shewana3_2900 - farnesyl-diphosphate synthase (RefSeq), at 3,469,067 to 3,469,948
_2900
Position (kb)
3467
3468
3469 Strain fitness (log2 ratio)
-2
-1
0
1 at 3466.861 kb on - strand at 3466.900 kb on + strand at 3466.931 kb on - strand, within motB at 3467.033 kb on - strand, within motB at 3467.054 kb on + strand, within motB at 3467.149 kb on - strand, within motB at 3467.149 kb on - strand, within motB at 3467.297 kb on + strand, within motB at 3467.546 kb on - strand, within motB at 3467.615 kb on - strand, within motB at 3467.662 kb on + strand at 3467.838 kb on - strand, within Shewana3_2898 at 3467.952 kb on - strand, within Shewana3_2898 at 3468.037 kb on + strand, within Shewana3_2898 at 3468.156 kb on - strand, within Shewana3_2898 at 3468.286 kb on + strand, within Shewana3_2898 at 3468.455 kb on + strand at 3468.463 kb on - strand at 3468.783 kb on + strand at 3468.786 kb on + strand at 3469.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 3,466,861 - +0.6 3,466,900 + +0.4 3,466,931 - motB Shewana3_2897 0.12 +0.4 3,467,033 - motB Shewana3_2897 0.23 +0.8 3,467,054 + motB Shewana3_2897 0.26 +0.3 3,467,149 - motB Shewana3_2897 0.36 +0.2 3,467,149 - motB Shewana3_2897 0.36 +0.5 3,467,297 + motB Shewana3_2897 0.52 -2.1 3,467,546 - motB Shewana3_2897 0.79 +0.4 3,467,615 - motB Shewana3_2897 0.86 +0.3 3,467,662 + -1.5 3,467,838 - Shewana3_2898 0.12 +0.7 3,467,952 - Shewana3_2898 0.27 +0.7 3,468,037 + Shewana3_2898 0.38 +1.0 3,468,156 - Shewana3_2898 0.54 +1.0 3,468,286 + Shewana3_2898 0.71 -0.2 3,468,455 + -0.5 3,468,463 - +0.5 3,468,783 + -0.3 3,468,786 + -0.1 3,469,055 + -0.5
Or see this region's nucleotide sequence