Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2844

Experiment: syringaldehyde 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2843 and Shewana3_2844 are separated by 614 nucleotidesShewana3_2844 and Shewana3_2845 are separated by 171 nucleotides Shewana3_2843: Shewana3_2843 - 2-nitropropane dioxygenase, NPD (RefSeq), at 3,402,696 to 3,404,342 _2843 Shewana3_2844: Shewana3_2844 - hypothetical protein (RefSeq), at 3,404,957 to 3,405,271 _2844 Shewana3_2845: Shewana3_2845 - hypothetical protein (RefSeq), at 3,405,443 to 3,405,871 _2845 Position (kb) 3404 3405 3406Strain fitness (log2 ratio) -2 -1 0 1at 3403.992 kb on - strand, within Shewana3_2843at 3403.996 kb on + strand, within Shewana3_2843at 3403.996 kb on + strand, within Shewana3_2843at 3404.036 kb on + strand, within Shewana3_2843at 3404.107 kb on - strand, within Shewana3_2843at 3404.274 kb on - strandat 3404.333 kb on - strandat 3404.358 kb on - strandat 3404.515 kb on + strandat 3404.536 kb on - strandat 3404.536 kb on - strandat 3404.536 kb on - strandat 3404.576 kb on + strandat 3404.747 kb on - strandat 3404.831 kb on - strandat 3405.059 kb on + strand, within Shewana3_2844at 3405.067 kb on - strand, within Shewana3_2844at 3405.113 kb on - strand, within Shewana3_2844at 3405.118 kb on + strand, within Shewana3_2844at 3405.205 kb on - strand, within Shewana3_2844at 3405.279 kb on + strandat 3405.522 kb on + strand, within Shewana3_2845at 3405.830 kb on - strandat 3405.879 kb on + strandat 3405.887 kb on - strandat 3406.231 kb on + strandat 3406.240 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
remove
3,403,992 - Shewana3_2843 0.79 +0.0
3,403,996 + Shewana3_2843 0.79 +0.3
3,403,996 + Shewana3_2843 0.79 +0.1
3,404,036 + Shewana3_2843 0.81 +0.5
3,404,107 - Shewana3_2843 0.86 -1.0
3,404,274 - -0.6
3,404,333 - -0.6
3,404,358 - -0.5
3,404,515 + -0.2
3,404,536 - +0.3
3,404,536 - -0.2
3,404,536 - -0.2
3,404,576 + +0.3
3,404,747 - -0.4
3,404,831 - -1.1
3,405,059 + Shewana3_2844 0.32 -0.6
3,405,067 - Shewana3_2844 0.35 -1.1
3,405,113 - Shewana3_2844 0.50 -2.6
3,405,118 + Shewana3_2844 0.51 -0.4
3,405,205 - Shewana3_2844 0.79 -0.8
3,405,279 + -0.6
3,405,522 + Shewana3_2845 0.18 -0.4
3,405,830 - +0.4
3,405,879 + -0.7
3,405,887 - +0.1
3,406,231 + +0.1
3,406,240 - -0.9

Or see this region's nucleotide sequence