Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2697

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2696 and Shewana3_2697 are separated by 121 nucleotidesShewana3_2697 and Shewana3_2698 overlap by 11 nucleotidesShewana3_2698 and Shewana3_2699 are separated by 20 nucleotides Shewana3_2696: Shewana3_2696 - major facilitator transporter (RefSeq), at 3,221,705 to 3,223,063 _2696 Shewana3_2697: Shewana3_2697 - N-acetylglucosamine 6-phosphate deacetylase (RefSeq), at 3,223,185 to 3,224,369 _2697 Shewana3_2698: Shewana3_2698 - N-acetylglucosamine kinase (RefSeq), at 3,224,359 to 3,225,285 _2698 Shewana3_2699: Shewana3_2699 - sugar isomerase (SIS) (RefSeq), at 3,225,306 to 3,226,466 _2699 Position (kb) 3223 3224 3225Strain fitness (log2 ratio) -3 -2 -1 0 1at 3222.198 kb on - strand, within Shewana3_2696at 3222.250 kb on + strand, within Shewana3_2696at 3222.282 kb on - strand, within Shewana3_2696at 3222.660 kb on + strand, within Shewana3_2696at 3222.660 kb on + strand, within Shewana3_2696at 3222.697 kb on - strand, within Shewana3_2696at 3223.192 kb on + strandat 3223.215 kb on - strandat 3223.215 kb on - strandat 3223.249 kb on - strandat 3223.352 kb on + strand, within Shewana3_2697at 3223.375 kb on - strand, within Shewana3_2697at 3223.745 kb on - strand, within Shewana3_2697at 3223.814 kb on + strand, within Shewana3_2697at 3223.883 kb on - strand, within Shewana3_2697at 3224.324 kb on + strandat 3224.662 kb on - strand, within Shewana3_2698at 3224.664 kb on + strand, within Shewana3_2698at 3224.715 kb on + strand, within Shewana3_2698at 3224.723 kb on - strand, within Shewana3_2698at 3224.723 kb on - strand, within Shewana3_2698at 3224.754 kb on - strand, within Shewana3_2698at 3225.044 kb on - strand, within Shewana3_2698at 3225.094 kb on - strand, within Shewana3_2698at 3225.128 kb on - strand, within Shewana3_2698at 3225.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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3,222,198 - Shewana3_2696 0.36 -1.8
3,222,250 + Shewana3_2696 0.40 +0.4
3,222,282 - Shewana3_2696 0.42 +0.6
3,222,660 + Shewana3_2696 0.70 -0.2
3,222,660 + Shewana3_2696 0.70 -0.1
3,222,697 - Shewana3_2696 0.73 -0.2
3,223,192 + -2.8
3,223,215 - +0.3
3,223,215 - +1.4
3,223,249 - +1.4
3,223,352 + Shewana3_2697 0.14 -1.2
3,223,375 - Shewana3_2697 0.16 +0.5
3,223,745 - Shewana3_2697 0.47 +0.3
3,223,814 + Shewana3_2697 0.53 -0.9
3,223,883 - Shewana3_2697 0.59 +0.1
3,224,324 + +1.1
3,224,662 - Shewana3_2698 0.33 -0.1
3,224,664 + Shewana3_2698 0.33 +0.1
3,224,715 + Shewana3_2698 0.38 -0.4
3,224,723 - Shewana3_2698 0.39 -0.2
3,224,723 - Shewana3_2698 0.39 +0.1
3,224,754 - Shewana3_2698 0.43 -0.0
3,225,044 - Shewana3_2698 0.74 +0.7
3,225,094 - Shewana3_2698 0.79 -0.4
3,225,128 - Shewana3_2698 0.83 +1.4
3,225,364 + -0.6

Or see this region's nucleotide sequence