Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2696 and Shewana3_2697 are separated by 121 nucleotides Shewana3_2697 and Shewana3_2698 overlap by 11 nucleotides Shewana3_2698 and Shewana3_2699 are separated by 20 nucleotides
Shewana3_2696: Shewana3_2696 - major facilitator transporter (RefSeq), at 3,221,705 to 3,223,063
_2696
Shewana3_2697: Shewana3_2697 - N-acetylglucosamine 6-phosphate deacetylase (RefSeq), at 3,223,185 to 3,224,369
_2697
Shewana3_2698: Shewana3_2698 - N-acetylglucosamine kinase (RefSeq), at 3,224,359 to 3,225,285
_2698
Shewana3_2699: Shewana3_2699 - sugar isomerase (SIS) (RefSeq), at 3,225,306 to 3,226,466
_2699
Position (kb)
3223
3224
3225 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3222.198 kb on - strand, within Shewana3_2696 at 3222.250 kb on + strand, within Shewana3_2696 at 3222.282 kb on - strand, within Shewana3_2696 at 3222.660 kb on + strand, within Shewana3_2696 at 3222.660 kb on + strand, within Shewana3_2696 at 3222.697 kb on - strand, within Shewana3_2696 at 3223.192 kb on + strand at 3223.215 kb on - strand at 3223.215 kb on - strand at 3223.249 kb on - strand at 3223.352 kb on + strand, within Shewana3_2697 at 3223.375 kb on - strand, within Shewana3_2697 at 3223.745 kb on - strand, within Shewana3_2697 at 3223.814 kb on + strand, within Shewana3_2697 at 3223.883 kb on - strand, within Shewana3_2697 at 3224.324 kb on + strand at 3224.662 kb on - strand, within Shewana3_2698 at 3224.664 kb on + strand, within Shewana3_2698 at 3224.715 kb on + strand, within Shewana3_2698 at 3224.723 kb on - strand, within Shewana3_2698 at 3224.723 kb on - strand, within Shewana3_2698 at 3224.754 kb on - strand, within Shewana3_2698 at 3225.044 kb on - strand, within Shewana3_2698 at 3225.094 kb on - strand, within Shewana3_2698 at 3225.128 kb on - strand, within Shewana3_2698 at 3225.364 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 3,222,198 - Shewana3_2696 0.36 -1.8 3,222,250 + Shewana3_2696 0.40 +0.4 3,222,282 - Shewana3_2696 0.42 +0.6 3,222,660 + Shewana3_2696 0.70 -0.2 3,222,660 + Shewana3_2696 0.70 -0.1 3,222,697 - Shewana3_2696 0.73 -0.2 3,223,192 + -2.8 3,223,215 - +0.3 3,223,215 - +1.4 3,223,249 - +1.4 3,223,352 + Shewana3_2697 0.14 -1.2 3,223,375 - Shewana3_2697 0.16 +0.5 3,223,745 - Shewana3_2697 0.47 +0.3 3,223,814 + Shewana3_2697 0.53 -0.9 3,223,883 - Shewana3_2697 0.59 +0.1 3,224,324 + +1.1 3,224,662 - Shewana3_2698 0.33 -0.1 3,224,664 + Shewana3_2698 0.33 +0.1 3,224,715 + Shewana3_2698 0.38 -0.4 3,224,723 - Shewana3_2698 0.39 -0.2 3,224,723 - Shewana3_2698 0.39 +0.1 3,224,754 - Shewana3_2698 0.43 -0.0 3,225,044 - Shewana3_2698 0.74 +0.7 3,225,094 - Shewana3_2698 0.79 -0.4 3,225,128 - Shewana3_2698 0.83 +1.4 3,225,364 + -0.6
Or see this region's nucleotide sequence