Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2694 and Shewana3_2695 overlap by 4 nucleotides Shewana3_2695 and Shewana3_2696 overlap by 11 nucleotides Shewana3_2696 and Shewana3_2697 are separated by 121 nucleotides
Shewana3_2694: Shewana3_2694 - AzlC family protein (RefSeq), at 3,220,649 to 3,221,416
_2694
Shewana3_2695: Shewana3_2695 - branched-chain amino acid transport (RefSeq), at 3,221,413 to 3,221,715
_2695
Shewana3_2696: Shewana3_2696 - major facilitator transporter (RefSeq), at 3,221,705 to 3,223,063
_2696
Shewana3_2697: Shewana3_2697 - N-acetylglucosamine 6-phosphate deacetylase (RefSeq), at 3,223,185 to 3,224,369
_2697
Position (kb)
3221
3222
3223
3224 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3220.747 kb on + strand, within Shewana3_2694 at 3220.936 kb on + strand, within Shewana3_2694 at 3221.044 kb on + strand, within Shewana3_2694 at 3221.078 kb on + strand, within Shewana3_2694 at 3221.079 kb on - strand, within Shewana3_2694 at 3221.106 kb on + strand, within Shewana3_2694 at 3221.106 kb on + strand, within Shewana3_2694 at 3221.284 kb on - strand, within Shewana3_2694 at 3221.340 kb on + strand at 3221.355 kb on - strand at 3221.367 kb on - strand at 3221.680 kb on + strand, within Shewana3_2695 at 3221.734 kb on - strand at 3221.743 kb on - strand at 3221.855 kb on - strand, within Shewana3_2696 at 3221.918 kb on - strand, within Shewana3_2696 at 3221.929 kb on + strand, within Shewana3_2696 at 3221.937 kb on - strand, within Shewana3_2696 at 3221.942 kb on + strand, within Shewana3_2696 at 3222.127 kb on - strand, within Shewana3_2696 at 3222.171 kb on + strand, within Shewana3_2696 at 3222.198 kb on - strand, within Shewana3_2696 at 3222.250 kb on + strand, within Shewana3_2696 at 3222.282 kb on - strand, within Shewana3_2696 at 3222.660 kb on + strand, within Shewana3_2696 at 3222.660 kb on + strand, within Shewana3_2696 at 3222.697 kb on - strand, within Shewana3_2696 at 3223.192 kb on + strand at 3223.215 kb on - strand at 3223.215 kb on - strand at 3223.249 kb on - strand at 3223.352 kb on + strand, within Shewana3_2697 at 3223.375 kb on - strand, within Shewana3_2697 at 3223.745 kb on - strand, within Shewana3_2697 at 3223.814 kb on + strand, within Shewana3_2697 at 3223.883 kb on - strand, within Shewana3_2697
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 3,220,747 + Shewana3_2694 0.13 -1.2 3,220,936 + Shewana3_2694 0.37 +0.3 3,221,044 + Shewana3_2694 0.51 +0.4 3,221,078 + Shewana3_2694 0.56 -0.7 3,221,079 - Shewana3_2694 0.56 -2.9 3,221,106 + Shewana3_2694 0.60 -0.5 3,221,106 + Shewana3_2694 0.60 +0.7 3,221,284 - Shewana3_2694 0.83 +0.4 3,221,340 + +0.1 3,221,355 - -1.8 3,221,367 - +0.9 3,221,680 + Shewana3_2695 0.88 -1.4 3,221,734 - +0.2 3,221,743 - -0.8 3,221,855 - Shewana3_2696 0.11 -0.9 3,221,918 - Shewana3_2696 0.16 -0.7 3,221,929 + Shewana3_2696 0.16 -1.4 3,221,937 - Shewana3_2696 0.17 -0.7 3,221,942 + Shewana3_2696 0.17 +0.4 3,222,127 - Shewana3_2696 0.31 -0.3 3,222,171 + Shewana3_2696 0.34 +0.8 3,222,198 - Shewana3_2696 0.36 -1.8 3,222,250 + Shewana3_2696 0.40 +0.4 3,222,282 - Shewana3_2696 0.42 +0.6 3,222,660 + Shewana3_2696 0.70 -0.2 3,222,660 + Shewana3_2696 0.70 -0.1 3,222,697 - Shewana3_2696 0.73 -0.2 3,223,192 + -2.8 3,223,215 - +0.3 3,223,215 - +1.4 3,223,249 - +1.4 3,223,352 + Shewana3_2697 0.14 -1.2 3,223,375 - Shewana3_2697 0.16 +0.5 3,223,745 - Shewana3_2697 0.47 +0.3 3,223,814 + Shewana3_2697 0.53 -0.9 3,223,883 - Shewana3_2697 0.59 +0.1
Or see this region's nucleotide sequence