Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2652 and Shewana3_2653 are separated by 3 nucleotides Shewana3_2653 and Shewana3_2654 overlap by 20 nucleotides Shewana3_2654 and Shewana3_2655 are separated by 105 nucleotides
Shewana3_2652: Shewana3_2652 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,165,894 to 3,166,784
_2652
Shewana3_2653: Shewana3_2653 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 3,166,788 to 3,167,795
_2653
Shewana3_2654: Shewana3_2654 - ABC transporter related (RefSeq), at 3,167,776 to 3,168,561
_2654
Shewana3_2655: Shewana3_2655 - trans-2-enoyl-CoA reductase (RefSeq), at 3,168,667 to 3,169,869
_2655
Position (kb) 3167
3168
3169 Strain fitness (log2 ratio) -1
0
1 at 3167.790 kb on + strand at 3167.956 kb on - strand, within Shewana3_2654 at 3167.960 kb on + strand, within Shewana3_2654 at 3168.080 kb on + strand, within Shewana3_2654 at 3168.123 kb on + strand, within Shewana3_2654 at 3168.123 kb on + strand, within Shewana3_2654 at 3168.341 kb on + strand, within Shewana3_2654 at 3168.341 kb on + strand, within Shewana3_2654
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 3,167,790 + +0.4 3,167,956 - Shewana3_2654 0.23 +0.4 3,167,960 + Shewana3_2654 0.23 +1.4 3,168,080 + Shewana3_2654 0.39 +0.4 3,168,123 + Shewana3_2654 0.44 -1.2 3,168,123 + Shewana3_2654 0.44 +0.4 3,168,341 + Shewana3_2654 0.72 +0.4 3,168,341 + Shewana3_2654 0.72 -0.6
Or see this region's nucleotide sequence