Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2567
Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 1 mM |
---|---|---|---|---|---|
remove | |||||
3,067,389 | + | Shewana3_2566 | 0.68 | +1.4 | |
3,067,534 | - | Shewana3_2566 | 0.83 | -0.4 | |
3,067,584 | - | Shewana3_2566 | 0.88 | -0.2 | |
3,067,649 | - | +0.4 | |||
3,067,697 | - | -1.0 | |||
3,067,697 | - | -0.2 | |||
3,067,708 | + | -0.6 | |||
3,070,156 | + | Shewana3_2567 | 0.57 | -2.1 | |
3,070,399 | + | Shewana3_2567 | 0.65 | -0.5 | |
3,070,419 | + | Shewana3_2567 | 0.65 | -1.2 | |
3,070,827 | + | Shewana3_2567 | 0.77 | -2.4 | |
3,070,837 | + | Shewana3_2567 | 0.78 | -2.4 | |
3,071,082 | + | Shewana3_2567 | 0.85 | -0.5 | |
3,071,241 | + | -0.5 | |||
3,071,435 | + | -1.5 | |||
3,072,479 | + | Shewana3_2568 | 0.49 | -0.1 |
Or see this region's nucleotide sequence