Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2564 and Shewana3_2565 are separated by 160 nucleotides Shewana3_2565 and Shewana3_2566 are separated by 51 nucleotides Shewana3_2566 and Shewana3_2567 are separated by 565 nucleotides
Shewana3_2564: Shewana3_2564 - maf protein (RefSeq), at 3,065,183 to 3,065,770
_2564
Shewana3_2565: Shewana3_2565 - HAD family hydrolase (RefSeq), at 3,065,931 to 3,066,665
_2565
Shewana3_2566: Shewana3_2566 - ribosomal large subunit pseudouridine synthase C (RefSeq), at 3,066,717 to 3,067,706
_2566
Shewana3_2567: Shewana3_2567 - RNAse E (RefSeq), at 3,068,272 to 3,071,568
_2567
Position (kb)
3066
3067
3068 Strain fitness (log2 ratio)
-1
0
1 at 3065.720 kb on - strand at 3065.727 kb on + strand at 3065.770 kb on + strand at 3065.778 kb on - strand at 3065.830 kb on - strand at 3065.892 kb on - strand at 3066.031 kb on + strand, within Shewana3_2565 at 3066.065 kb on - strand, within Shewana3_2565 at 3066.156 kb on - strand, within Shewana3_2565 at 3066.222 kb on + strand, within Shewana3_2565 at 3066.230 kb on - strand, within Shewana3_2565 at 3066.230 kb on - strand, within Shewana3_2565 at 3066.335 kb on + strand, within Shewana3_2565 at 3066.671 kb on - strand at 3066.671 kb on - strand at 3066.693 kb on - strand at 3066.810 kb on + strand at 3066.841 kb on + strand, within Shewana3_2566 at 3066.900 kb on + strand, within Shewana3_2566 at 3066.969 kb on - strand, within Shewana3_2566 at 3067.107 kb on - strand, within Shewana3_2566 at 3067.389 kb on + strand, within Shewana3_2566 at 3067.534 kb on - strand, within Shewana3_2566 at 3067.584 kb on - strand, within Shewana3_2566 at 3067.649 kb on - strand at 3067.697 kb on - strand at 3067.697 kb on - strand at 3067.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 3,065,720 - +0.1 3,065,727 + +0.1 3,065,770 + -0.6 3,065,778 - +0.4 3,065,830 - +0.1 3,065,892 - -1.3 3,066,031 + Shewana3_2565 0.14 -0.6 3,066,065 - Shewana3_2565 0.18 -0.4 3,066,156 - Shewana3_2565 0.31 +0.4 3,066,222 + Shewana3_2565 0.40 -0.2 3,066,230 - Shewana3_2565 0.41 +0.7 3,066,230 - Shewana3_2565 0.41 +0.5 3,066,335 + Shewana3_2565 0.55 -0.6 3,066,671 - +0.3 3,066,671 - +0.1 3,066,693 - +1.4 3,066,810 + +1.4 3,066,841 + Shewana3_2566 0.13 +1.4 3,066,900 + Shewana3_2566 0.18 +0.4 3,066,969 - Shewana3_2566 0.25 -1.2 3,067,107 - Shewana3_2566 0.39 +0.4 3,067,389 + Shewana3_2566 0.68 +1.4 3,067,534 - Shewana3_2566 0.83 -0.4 3,067,584 - Shewana3_2566 0.88 -0.2 3,067,649 - +0.4 3,067,697 - -1.0 3,067,697 - -0.2 3,067,708 + -0.6
Or see this region's nucleotide sequence