Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2547

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2545 and purN overlap by 1 nucleotidespurN and Shewana3_2547 are separated by 138 nucleotidesShewana3_2547 and Shewana3_2548 are separated by 197 nucleotides Shewana3_2545: Shewana3_2545 - phosphoribosylaminoimidazole synthetase (RefSeq), at 3,042,708 to 3,043,745 _2545 Shewana3_2546: purN - phosphoribosylglycinamide formyltransferase (RefSeq), at 3,043,745 to 3,044,389 purN Shewana3_2547: Shewana3_2547 - UMP phosphatase (RefSeq), at 3,044,528 to 3,045,274 _2547 Shewana3_2548: Shewana3_2548 - peptidase M28 (RefSeq), at 3,045,472 to 3,047,145 _2548 Position (kb) 3044 3045 3046Strain fitness (log2 ratio) -2 -1 0 1at 3043.696 kb on + strandat 3043.725 kb on + strandat 3043.756 kb on - strandat 3043.758 kb on + strandat 3043.826 kb on + strand, within purNat 3044.089 kb on + strand, within purNat 3044.172 kb on + strand, within purNat 3044.278 kb on + strand, within purNat 3044.307 kb on + strand, within purNat 3044.315 kb on - strand, within purNat 3044.675 kb on - strand, within Shewana3_2547at 3044.816 kb on - strand, within Shewana3_2547at 3045.074 kb on + strand, within Shewana3_2547at 3045.172 kb on - strand, within Shewana3_2547at 3045.300 kb on + strandat 3045.465 kb on - strandat 3045.643 kb on - strand, within Shewana3_2548at 3046.148 kb on - strand, within Shewana3_2548

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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3,043,696 + -0.4
3,043,725 + +0.2
3,043,756 - -1.8
3,043,758 + +0.1
3,043,826 + purN Shewana3_2546 0.13 +0.4
3,044,089 + purN Shewana3_2546 0.53 +0.1
3,044,172 + purN Shewana3_2546 0.66 -0.0
3,044,278 + purN Shewana3_2546 0.83 +0.4
3,044,307 + purN Shewana3_2546 0.87 +0.8
3,044,315 - purN Shewana3_2546 0.88 -0.2
3,044,675 - Shewana3_2547 0.20 +0.5
3,044,816 - Shewana3_2547 0.39 -1.0
3,045,074 + Shewana3_2547 0.73 -1.6
3,045,172 - Shewana3_2547 0.86 -0.2
3,045,300 + +0.4
3,045,465 - +0.4
3,045,643 - Shewana3_2548 0.10 -1.0
3,046,148 - Shewana3_2548 0.40 -0.5

Or see this region's nucleotide sequence