Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2539 and Shewana3_2540 are separated by 142 nucleotides Shewana3_2540 and Shewana3_2541 are separated by 74 nucleotides Shewana3_2541 and Shewana3_2542 are separated by 370 nucleotides
Shewana3_2539: Shewana3_2539 - OmpA/MotB domain-containing protein (RefSeq), at 3,036,008 to 3,036,880
_2539
Shewana3_2540: Shewana3_2540 - ribonuclease T (RefSeq), at 3,037,023 to 3,037,691
_2540
Shewana3_2541: Shewana3_2541 - alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen (RefSeq), at 3,037,766 to 3,038,371
_2541
Shewana3_2542: Shewana3_2542 - Na+/H+ antiporter NhaC (RefSeq), at 3,038,742 to 3,040,061
_2542
Position (kb)
3037
3038
3039 Strain fitness (log2 ratio)
-1
0
1 at 3036.805 kb on + strand at 3037.106 kb on + strand, within Shewana3_2540 at 3037.206 kb on + strand, within Shewana3_2540 at 3037.572 kb on + strand, within Shewana3_2540 at 3037.728 kb on + strand at 3037.820 kb on + strand at 3037.984 kb on - strand, within Shewana3_2541 at 3038.166 kb on - strand, within Shewana3_2541 at 3038.171 kb on - strand, within Shewana3_2541 at 3038.192 kb on - strand, within Shewana3_2541 at 3038.305 kb on - strand, within Shewana3_2541 at 3038.315 kb on + strand at 3038.323 kb on - strand at 3038.576 kb on - strand at 3038.765 kb on + strand at 3038.816 kb on + strand at 3038.918 kb on + strand, within Shewana3_2542 at 3039.046 kb on + strand, within Shewana3_2542 at 3039.158 kb on + strand, within Shewana3_2542 at 3039.199 kb on + strand, within Shewana3_2542
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 3,036,805 + +1.4 3,037,106 + Shewana3_2540 0.12 +1.4 3,037,206 + Shewana3_2540 0.27 +0.4 3,037,572 + Shewana3_2540 0.82 -0.4 3,037,728 + -1.2 3,037,820 + +0.4 3,037,984 - Shewana3_2541 0.36 +0.6 3,038,166 - Shewana3_2541 0.66 +0.3 3,038,171 - Shewana3_2541 0.67 +0.5 3,038,192 - Shewana3_2541 0.70 +1.1 3,038,305 - Shewana3_2541 0.89 +0.8 3,038,315 + +0.4 3,038,323 - +1.0 3,038,576 - -0.6 3,038,765 + -0.5 3,038,816 + +0.4 3,038,918 + Shewana3_2542 0.13 -1.3 3,039,046 + Shewana3_2542 0.23 -0.6 3,039,158 + Shewana3_2542 0.32 +0.2 3,039,199 + Shewana3_2542 0.35 +0.8
Or see this region's nucleotide sequence