Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2472 and Shewana3_2473 are separated by 106 nucleotides Shewana3_2473 and Shewana3_2474 are separated by 287 nucleotides Shewana3_2474 and Shewana3_2475 are separated by 230 nucleotides
Shewana3_2472: Shewana3_2472 - oxoglutarate dehydrogenase (succinyl-transferring) (RefSeq), at 2,958,732 to 2,959,757
_2472
Shewana3_2473: Shewana3_2473 - succinate dehydrogenase (ubiquinone) (RefSeq), at 2,959,864 to 2,960,595
_2473
Shewana3_2474: Shewana3_2474 - hypothetical protein (RefSeq), at 2,960,883 to 2,961,149
_2474
Shewana3_2475: Shewana3_2475 - AMP-binding domain protein (RefSeq), at 2,961,380 to 2,963,104
_2475
Position (kb)
2959
2960
2961 Strain fitness (log2 ratio)
-2
-1
0
1 at 2959.183 kb on - strand, within Shewana3_2472 at 2959.226 kb on + strand, within Shewana3_2472 at 2959.459 kb on - strand, within Shewana3_2472 at 2959.840 kb on + strand at 2960.210 kb on + strand, within Shewana3_2473 at 2960.250 kb on - strand, within Shewana3_2473 at 2960.611 kb on + strand at 2961.009 kb on + strand, within Shewana3_2474 at 2961.053 kb on + strand, within Shewana3_2474 at 2961.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,959,183 - Shewana3_2472 0.44 +1.4 2,959,226 + Shewana3_2472 0.48 -1.8 2,959,459 - Shewana3_2472 0.71 +0.3 2,959,840 + -0.2 2,960,210 + Shewana3_2473 0.47 -0.6 2,960,250 - Shewana3_2473 0.53 +1.1 2,960,611 + -1.1 2,961,009 + Shewana3_2474 0.47 +0.6 2,961,053 + Shewana3_2474 0.64 +0.9 2,961,504 - -0.2
Or see this region's nucleotide sequence