Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2430

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2429 and Shewana3_2430 are separated by 100 nucleotidesShewana3_2430 and Shewana3_2431 are separated by 157 nucleotides Shewana3_2429: Shewana3_2429 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,912,312 to 2,913,424 _2429 Shewana3_2430: Shewana3_2430 - LysR family transcriptional regulator (RefSeq), at 2,913,525 to 2,914,391 _2430 Shewana3_2431: Shewana3_2431 - diguanylate cyclase (RefSeq), at 2,914,549 to 2,915,538 _2431 Position (kb) 2913 2914 2915Strain fitness (log2 ratio) -2 -1 0 1at 2912.698 kb on + strand, within Shewana3_2429at 2912.700 kb on - strand, within Shewana3_2429at 2912.706 kb on - strand, within Shewana3_2429at 2912.706 kb on - strand, within Shewana3_2429at 2912.766 kb on - strand, within Shewana3_2429at 2912.942 kb on - strand, within Shewana3_2429at 2913.018 kb on - strand, within Shewana3_2429at 2913.176 kb on + strand, within Shewana3_2429at 2913.208 kb on + strand, within Shewana3_2429at 2913.732 kb on + strand, within Shewana3_2430at 2913.828 kb on - strand, within Shewana3_2430at 2913.862 kb on - strand, within Shewana3_2430at 2913.958 kb on + strand, within Shewana3_2430at 2914.136 kb on - strand, within Shewana3_2430at 2914.184 kb on - strand, within Shewana3_2430at 2914.266 kb on + strand, within Shewana3_2430at 2914.789 kb on + strand, within Shewana3_2431at 2914.797 kb on - strand, within Shewana3_2431at 2914.850 kb on + strand, within Shewana3_2431at 2915.028 kb on - strand, within Shewana3_2431at 2915.129 kb on - strand, within Shewana3_2431at 2915.369 kb on - strand, within Shewana3_2431

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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2,912,698 + Shewana3_2429 0.35 +1.4
2,912,700 - Shewana3_2429 0.35 -0.3
2,912,706 - Shewana3_2429 0.35 +0.7
2,912,706 - Shewana3_2429 0.35 -0.2
2,912,766 - Shewana3_2429 0.41 -2.0
2,912,942 - Shewana3_2429 0.57 -1.5
2,913,018 - Shewana3_2429 0.63 +0.2
2,913,176 + Shewana3_2429 0.78 +1.0
2,913,208 + Shewana3_2429 0.81 -1.6
2,913,732 + Shewana3_2430 0.24 -0.6
2,913,828 - Shewana3_2430 0.35 -0.2
2,913,862 - Shewana3_2430 0.39 -2.0
2,913,958 + Shewana3_2430 0.50 -1.0
2,914,136 - Shewana3_2430 0.70 +0.9
2,914,184 - Shewana3_2430 0.76 +0.4
2,914,266 + Shewana3_2430 0.85 +0.0
2,914,789 + Shewana3_2431 0.24 +0.3
2,914,797 - Shewana3_2431 0.25 -0.6
2,914,850 + Shewana3_2431 0.30 +0.4
2,915,028 - Shewana3_2431 0.48 -0.2
2,915,129 - Shewana3_2431 0.59 -0.3
2,915,369 - Shewana3_2431 0.83 -0.2

Or see this region's nucleotide sequence