Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2430
Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 1 mM |
---|---|---|---|---|---|
remove | |||||
2,912,698 | + | Shewana3_2429 | 0.35 | +1.4 | |
2,912,700 | - | Shewana3_2429 | 0.35 | -0.3 | |
2,912,706 | - | Shewana3_2429 | 0.35 | +0.7 | |
2,912,706 | - | Shewana3_2429 | 0.35 | -0.2 | |
2,912,766 | - | Shewana3_2429 | 0.41 | -2.0 | |
2,912,942 | - | Shewana3_2429 | 0.57 | -1.5 | |
2,913,018 | - | Shewana3_2429 | 0.63 | +0.2 | |
2,913,176 | + | Shewana3_2429 | 0.78 | +1.0 | |
2,913,208 | + | Shewana3_2429 | 0.81 | -1.6 | |
2,913,732 | + | Shewana3_2430 | 0.24 | -0.6 | |
2,913,828 | - | Shewana3_2430 | 0.35 | -0.2 | |
2,913,862 | - | Shewana3_2430 | 0.39 | -2.0 | |
2,913,958 | + | Shewana3_2430 | 0.50 | -1.0 | |
2,914,136 | - | Shewana3_2430 | 0.70 | +0.9 | |
2,914,184 | - | Shewana3_2430 | 0.76 | +0.4 | |
2,914,266 | + | Shewana3_2430 | 0.85 | +0.0 | |
2,914,789 | + | Shewana3_2431 | 0.24 | +0.3 | |
2,914,797 | - | Shewana3_2431 | 0.25 | -0.6 | |
2,914,850 | + | Shewana3_2431 | 0.30 | +0.4 | |
2,915,028 | - | Shewana3_2431 | 0.48 | -0.2 | |
2,915,129 | - | Shewana3_2431 | 0.59 | -0.3 | |
2,915,369 | - | Shewana3_2431 | 0.83 | -0.2 |
Or see this region's nucleotide sequence