Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2394
Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 1 mM |
|---|---|---|---|---|---|
| remove | |||||
| 2,872,416 | - | Shewana3_2393 | 0.52 | +0.3 | |
| 2,872,462 | - | Shewana3_2393 | 0.57 | +0.8 | |
| 2,872,614 | - | Shewana3_2393 | 0.74 | +0.6 | |
| 2,872,774 | + | +1.2 | |||
| 2,872,929 | + | -0.0 | |||
| 2,873,040 | + | +0.1 | |||
| 2,873,058 | + | +0.0 | |||
| 2,873,129 | + | -0.2 | |||
| 2,873,136 | - | -0.5 | |||
| 2,873,176 | + | -0.1 | |||
| 2,873,269 | - | -0.5 | |||
| 2,873,342 | - | Shewana3_2394 | 0.13 | +0.7 | |
| 2,873,361 | - | Shewana3_2394 | 0.15 | -0.6 | |
| 2,873,472 | + | Shewana3_2394 | 0.29 | +0.1 | |
| 2,873,499 | - | Shewana3_2394 | 0.32 | +1.6 | |
| 2,873,700 | - | Shewana3_2394 | 0.56 | +0.4 | |
| 2,873,753 | + | Shewana3_2394 | 0.62 | +1.3 | |
| 2,873,769 | - | Shewana3_2394 | 0.64 | -0.1 | |
| 2,873,790 | + | Shewana3_2394 | 0.67 | +0.1 | |
| 2,873,810 | + | Shewana3_2394 | 0.69 | +1.1 |
Or see this region's nucleotide sequence