Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt minC and Shewana3_2383 are separated by 27 nucleotides Shewana3_2383 and minE are separated by 2 nucleotides minE and Shewana3_2385 are separated by 162 nucleotides
Shewana3_2382: minC - septum formation inhibitor (RefSeq), at 2,861,806 to 2,862,471
minC
Shewana3_2383: Shewana3_2383 - septum site-determining protein MinD (RefSeq), at 2,862,499 to 2,863,308
_2383
Shewana3_2384: minE - cell division topological specificity factor MinE (RefSeq), at 2,863,311 to 2,863,568
minE
Shewana3_2385: Shewana3_2385 - ribonuclease D (RefSeq), at 2,863,731 to 2,864,897
_2385
Position (kb)
2863
2864 Strain fitness (log2 ratio)
-1
0
1 at 2862.399 kb on + strand, within minC at 2862.490 kb on + strand at 2862.525 kb on + strand at 2862.926 kb on + strand, within Shewana3_2383 at 2863.079 kb on + strand, within Shewana3_2383 at 2863.526 kb on + strand, within minE at 2863.669 kb on + strand at 2863.677 kb on - strand at 2864.253 kb on - strand, within Shewana3_2385 at 2864.386 kb on + strand, within Shewana3_2385 at 2864.388 kb on + strand, within Shewana3_2385 at 2864.487 kb on + strand, within Shewana3_2385 at 2864.495 kb on - strand, within Shewana3_2385 at 2864.550 kb on - strand, within Shewana3_2385
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,862,399 + minC Shewana3_2382 0.89 +0.7 2,862,490 + +0.7 2,862,525 + -0.3 2,862,926 + Shewana3_2383 0.53 +0.4 2,863,079 + Shewana3_2383 0.72 -1.4 2,863,526 + minE Shewana3_2384 0.83 +0.5 2,863,669 + +0.4 2,863,677 - -0.4 2,864,253 - Shewana3_2385 0.45 +0.6 2,864,386 + Shewana3_2385 0.56 -1.0 2,864,388 + Shewana3_2385 0.56 -0.6 2,864,487 + Shewana3_2385 0.65 +1.4 2,864,495 - Shewana3_2385 0.65 +0.1 2,864,550 - Shewana3_2385 0.70 +0.4
Or see this region's nucleotide sequence