Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2360 and Shewana3_2361 overlap by 13 nucleotides Shewana3_2361 and Shewana3_2362 are separated by 223 nucleotides Shewana3_2362 and Shewana3_2363 are separated by 24 nucleotides
Shewana3_2360: Shewana3_2360 - IS3 family transposase (RefSeq), at 2,838,079 to 2,838,426
_2360
Shewana3_2361: Shewana3_2361 - integrase catalytic subunit (RefSeq), at 2,838,414 to 2,838,917
_2361
Shewana3_2362: Shewana3_2362 - NnrS family protein (RefSeq), at 2,839,141 to 2,840,352
_2362
Shewana3_2363: Shewana3_2363 - cytochrome c552 (RefSeq), at 2,840,377 to 2,841,810
_2363
Position (kb)
2839
2840
2841 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2838.429 kb on + strand at 2838.588 kb on + strand, within Shewana3_2361 at 2838.664 kb on + strand, within Shewana3_2361 at 2838.902 kb on - strand at 2838.932 kb on + strand at 2839.044 kb on + strand at 2839.344 kb on - strand, within Shewana3_2362 at 2839.564 kb on - strand, within Shewana3_2362 at 2839.854 kb on - strand, within Shewana3_2362 at 2839.856 kb on + strand, within Shewana3_2362 at 2839.909 kb on - strand, within Shewana3_2362 at 2839.991 kb on + strand, within Shewana3_2362 at 2840.059 kb on + strand, within Shewana3_2362 at 2840.202 kb on + strand, within Shewana3_2362 at 2840.304 kb on + strand at 2840.314 kb on + strand at 2840.579 kb on - strand, within Shewana3_2363 at 2840.663 kb on - strand, within Shewana3_2363 at 2840.668 kb on + strand, within Shewana3_2363 at 2840.712 kb on + strand, within Shewana3_2363 at 2840.712 kb on + strand, within Shewana3_2363 at 2840.714 kb on + strand, within Shewana3_2363 at 2840.714 kb on + strand, within Shewana3_2363 at 2840.739 kb on + strand, within Shewana3_2363 at 2840.806 kb on - strand, within Shewana3_2363 at 2840.891 kb on - strand, within Shewana3_2363 at 2840.920 kb on - strand, within Shewana3_2363
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,838,429 + -1.4 2,838,588 + Shewana3_2361 0.35 -0.2 2,838,664 + Shewana3_2361 0.50 -1.6 2,838,902 - +1.4 2,838,932 + -0.2 2,839,044 + -4.8 2,839,344 - Shewana3_2362 0.17 -0.4 2,839,564 - Shewana3_2362 0.35 -0.2 2,839,854 - Shewana3_2362 0.59 -1.4 2,839,856 + Shewana3_2362 0.59 +0.4 2,839,909 - Shewana3_2362 0.63 +0.4 2,839,991 + Shewana3_2362 0.70 -2.4 2,840,059 + Shewana3_2362 0.76 -0.2 2,840,202 + Shewana3_2362 0.88 -0.2 2,840,304 + +1.4 2,840,314 + -0.2 2,840,579 - Shewana3_2363 0.14 +1.4 2,840,663 - Shewana3_2363 0.20 +0.4 2,840,668 + Shewana3_2363 0.20 -0.2 2,840,712 + Shewana3_2363 0.23 +0.4 2,840,712 + Shewana3_2363 0.23 +0.9 2,840,714 + Shewana3_2363 0.24 +1.4 2,840,714 + Shewana3_2363 0.24 -1.6 2,840,739 + Shewana3_2363 0.25 -1.6 2,840,806 - Shewana3_2363 0.30 +0.1 2,840,891 - Shewana3_2363 0.36 +0.8 2,840,920 - Shewana3_2363 0.38 -0.1
Or see this region's nucleotide sequence