Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt def and Shewana3_2320 are separated by 192 nucleotides Shewana3_2320 and Shewana3_2321 are separated by 129 nucleotides Shewana3_2321 and Shewana3_2322 are separated by 163 nucleotides
Shewana3_2319: def - peptide deformylase (RefSeq), at 2,792,153 to 2,792,644
def
Shewana3_2320: Shewana3_2320 - methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq), at 2,792,837 to 2,793,295
_2320
Shewana3_2321: Shewana3_2321 - hypothetical protein (RefSeq), at 2,793,425 to 2,794,237
_2321
Shewana3_2322: Shewana3_2322 - glutamine amidotransferase, class-II (RefSeq), at 2,794,401 to 2,795,240
_2322
Position (kb)
2793
2794
2795 Strain fitness (log2 ratio)
-2
-1
0
1 at 2792.903 kb on - strand, within Shewana3_2320 at 2792.913 kb on - strand, within Shewana3_2320 at 2793.055 kb on - strand, within Shewana3_2320 at 2793.072 kb on + strand, within Shewana3_2320 at 2793.215 kb on - strand, within Shewana3_2320 at 2793.327 kb on - strand at 2793.349 kb on - strand at 2793.473 kb on - strand at 2793.717 kb on - strand, within Shewana3_2321 at 2793.723 kb on + strand, within Shewana3_2321 at 2793.765 kb on + strand, within Shewana3_2321 at 2793.928 kb on - strand, within Shewana3_2321 at 2793.990 kb on - strand, within Shewana3_2321 at 2794.043 kb on + strand, within Shewana3_2321 at 2794.306 kb on + strand at 2794.851 kb on - strand, within Shewana3_2322 at 2794.937 kb on - strand, within Shewana3_2322 at 2794.977 kb on - strand, within Shewana3_2322 at 2795.109 kb on - strand, within Shewana3_2322
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,792,903 - Shewana3_2320 0.14 -2.4 2,792,913 - Shewana3_2320 0.17 -1.2 2,793,055 - Shewana3_2320 0.47 -0.2 2,793,072 + Shewana3_2320 0.51 +1.4 2,793,215 - Shewana3_2320 0.82 -0.2 2,793,327 - -0.6 2,793,349 - +0.6 2,793,473 - +1.4 2,793,717 - Shewana3_2321 0.36 +0.1 2,793,723 + Shewana3_2321 0.37 -0.6 2,793,765 + Shewana3_2321 0.42 +0.2 2,793,928 - Shewana3_2321 0.62 -0.9 2,793,990 - Shewana3_2321 0.69 +0.4 2,794,043 + Shewana3_2321 0.76 +0.2 2,794,306 + -0.0 2,794,851 - Shewana3_2322 0.54 +0.8 2,794,937 - Shewana3_2322 0.64 -1.1 2,794,977 - Shewana3_2322 0.69 -0.5 2,795,109 - Shewana3_2322 0.84 +0.7
Or see this region's nucleotide sequence