Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2293 and Shewana3_2294 are separated by 104 nucleotides Shewana3_2294 and Shewana3_2295 overlap by 8 nucleotides Shewana3_2295 and Shewana3_2296 are separated by 111 nucleotides
Shewana3_2293: Shewana3_2293 - beta-hexosaminidase (RefSeq), at 2,757,050 to 2,758,078
_2293
Shewana3_2294: Shewana3_2294 - hypothetical protein (RefSeq), at 2,758,183 to 2,758,470
_2294
Shewana3_2295: Shewana3_2295 - L-serine ammonia-lyase (RefSeq), at 2,758,463 to 2,759,839
_2295
Shewana3_2296: Shewana3_2296 - hypothetical protein (RefSeq), at 2,759,951 to 2,760,688
_2296
Position (kb)
2758
2759
2760 Strain fitness (log2 ratio)
-2
-1
0
1 at 2757.577 kb on - strand, within Shewana3_2293 at 2757.625 kb on + strand, within Shewana3_2293 at 2757.702 kb on - strand, within Shewana3_2293 at 2757.728 kb on + strand, within Shewana3_2293 at 2757.890 kb on + strand, within Shewana3_2293 at 2758.050 kb on - strand at 2758.141 kb on - strand at 2758.607 kb on - strand, within Shewana3_2295 at 2758.617 kb on - strand, within Shewana3_2295 at 2758.754 kb on - strand, within Shewana3_2295 at 2758.759 kb on - strand, within Shewana3_2295 at 2759.061 kb on + strand, within Shewana3_2295 at 2759.164 kb on + strand, within Shewana3_2295 at 2759.373 kb on - strand, within Shewana3_2295 at 2759.606 kb on + strand, within Shewana3_2295 at 2759.702 kb on + strand at 2759.833 kb on + strand at 2760.051 kb on - strand, within Shewana3_2296 at 2760.076 kb on + strand, within Shewana3_2296 at 2760.084 kb on - strand, within Shewana3_2296 at 2760.084 kb on - strand, within Shewana3_2296 at 2760.094 kb on - strand, within Shewana3_2296 at 2760.110 kb on + strand, within Shewana3_2296 at 2760.165 kb on - strand, within Shewana3_2296 at 2760.464 kb on - strand, within Shewana3_2296 at 2760.466 kb on - strand, within Shewana3_2296 at 2760.559 kb on - strand, within Shewana3_2296
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,757,577 - Shewana3_2293 0.51 +0.4 2,757,625 + Shewana3_2293 0.56 +0.4 2,757,702 - Shewana3_2293 0.63 +1.4 2,757,728 + Shewana3_2293 0.66 +1.4 2,757,890 + Shewana3_2293 0.82 +0.4 2,758,050 - +0.4 2,758,141 - -0.3 2,758,607 - Shewana3_2295 0.10 -1.8 2,758,617 - Shewana3_2295 0.11 +1.4 2,758,754 - Shewana3_2295 0.21 -1.6 2,758,759 - Shewana3_2295 0.21 +0.4 2,759,061 + Shewana3_2295 0.43 -0.7 2,759,164 + Shewana3_2295 0.51 -0.5 2,759,373 - Shewana3_2295 0.66 +1.4 2,759,606 + Shewana3_2295 0.83 -1.0 2,759,702 + -1.1 2,759,833 + +0.4 2,760,051 - Shewana3_2296 0.14 -0.4 2,760,076 + Shewana3_2296 0.17 +0.3 2,760,084 - Shewana3_2296 0.18 -0.6 2,760,084 - Shewana3_2296 0.18 -0.1 2,760,094 - Shewana3_2296 0.19 -0.2 2,760,110 + Shewana3_2296 0.22 +0.4 2,760,165 - Shewana3_2296 0.29 +0.7 2,760,464 - Shewana3_2296 0.70 +0.4 2,760,466 - Shewana3_2296 0.70 +0.4 2,760,559 - Shewana3_2296 0.82 -1.4
Or see this region's nucleotide sequence