Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2290 and Shewana3_2291 are separated by 127 nucleotides Shewana3_2291 and Shewana3_2292 are separated by 596 nucleotides Shewana3_2292 and Shewana3_2293 are separated by 81 nucleotides
Shewana3_2290: Shewana3_2290 - hypothetical protein (RefSeq), at 2,754,407 to 2,755,432
_2290
Shewana3_2291: Shewana3_2291 - acylphosphatase (RefSeq), at 2,755,560 to 2,755,832
_2291
Shewana3_2292: Shewana3_2292 - hypothetical protein (RefSeq), at 2,756,429 to 2,756,968
_2292
Shewana3_2293: Shewana3_2293 - beta-hexosaminidase (RefSeq), at 2,757,050 to 2,758,078
_2293
Position (kb)
2756
2757 Strain fitness (log2 ratio)
-1
0
1 at 2755.613 kb on + strand, within Shewana3_2291 at 2755.641 kb on - strand, within Shewana3_2291 at 2756.335 kb on + strand at 2756.581 kb on - strand, within Shewana3_2292 at 2756.713 kb on - strand, within Shewana3_2292 at 2756.748 kb on + strand, within Shewana3_2292 at 2756.756 kb on - strand, within Shewana3_2292 at 2756.841 kb on + strand, within Shewana3_2292 at 2756.862 kb on + strand, within Shewana3_2292 at 2757.007 kb on + strand at 2757.364 kb on - strand, within Shewana3_2293 at 2757.428 kb on - strand, within Shewana3_2293 at 2757.577 kb on - strand, within Shewana3_2293 at 2757.625 kb on + strand, within Shewana3_2293 at 2757.702 kb on - strand, within Shewana3_2293 at 2757.728 kb on + strand, within Shewana3_2293 at 2757.890 kb on + strand, within Shewana3_2293
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,755,613 + Shewana3_2291 0.19 +1.4 2,755,641 - Shewana3_2291 0.30 +0.1 2,756,335 + +1.4 2,756,581 - Shewana3_2292 0.28 -1.1 2,756,713 - Shewana3_2292 0.53 -1.2 2,756,748 + Shewana3_2292 0.59 -1.4 2,756,756 - Shewana3_2292 0.61 +1.4 2,756,841 + Shewana3_2292 0.76 +0.4 2,756,862 + Shewana3_2292 0.80 +0.1 2,757,007 + +1.4 2,757,364 - Shewana3_2293 0.31 +0.9 2,757,428 - Shewana3_2293 0.37 -1.3 2,757,577 - Shewana3_2293 0.51 +0.4 2,757,625 + Shewana3_2293 0.56 +0.4 2,757,702 - Shewana3_2293 0.63 +1.4 2,757,728 + Shewana3_2293 0.66 +1.4 2,757,890 + Shewana3_2293 0.82 +0.4
Or see this region's nucleotide sequence