Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2225 and Shewana3_2226 are separated by 57 nucleotides Shewana3_2226 and Shewana3_2227 are separated by 240 nucleotides Shewana3_2227 and Shewana3_2228 are separated by 155 nucleotides
Shewana3_2225: Shewana3_2225 - secretion protein HlyD family protein (RefSeq), at 2,675,095 to 2,676,150
_2225
Shewana3_2226: Shewana3_2226 - MarR family transcriptional regulator (RefSeq), at 2,676,208 to 2,676,642
_2226
Shewana3_2227: Shewana3_2227 - diguanylate cyclase (RefSeq), at 2,676,883 to 2,677,911
_2227
Shewana3_2228: Shewana3_2228 - sulfatase (RefSeq), at 2,678,067 to 2,679,692
_2228
Position (kb)
2676
2677
2678 Strain fitness (log2 ratio)
-1
0
1
2 at 2676.260 kb on - strand, within Shewana3_2226 at 2676.292 kb on + strand, within Shewana3_2226 at 2676.405 kb on + strand, within Shewana3_2226 at 2676.418 kb on - strand, within Shewana3_2226 at 2676.450 kb on + strand, within Shewana3_2226 at 2676.491 kb on - strand, within Shewana3_2226 at 2676.612 kb on - strand at 2677.065 kb on + strand, within Shewana3_2227 at 2677.149 kb on + strand, within Shewana3_2227 at 2677.199 kb on + strand, within Shewana3_2227 at 2677.214 kb on - strand, within Shewana3_2227 at 2677.245 kb on + strand, within Shewana3_2227 at 2677.524 kb on + strand, within Shewana3_2227 at 2677.524 kb on + strand, within Shewana3_2227 at 2677.703 kb on + strand, within Shewana3_2227 at 2677.902 kb on - strand at 2678.063 kb on + strand at 2678.276 kb on + strand, within Shewana3_2228 at 2678.284 kb on - strand, within Shewana3_2228 at 2678.551 kb on - strand, within Shewana3_2228 at 2678.567 kb on + strand, within Shewana3_2228 at 2678.668 kb on - strand, within Shewana3_2228 at 2678.719 kb on - strand, within Shewana3_2228
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,676,260 - Shewana3_2226 0.12 +0.7 2,676,292 + Shewana3_2226 0.19 -0.7 2,676,405 + Shewana3_2226 0.45 +0.5 2,676,418 - Shewana3_2226 0.48 +0.4 2,676,450 + Shewana3_2226 0.56 +0.5 2,676,491 - Shewana3_2226 0.65 +2.0 2,676,612 - -0.1 2,677,065 + Shewana3_2227 0.18 +0.5 2,677,149 + Shewana3_2227 0.26 -0.1 2,677,199 + Shewana3_2227 0.31 +2.5 2,677,214 - Shewana3_2227 0.32 -1.7 2,677,245 + Shewana3_2227 0.35 +0.5 2,677,524 + Shewana3_2227 0.62 -1.1 2,677,524 + Shewana3_2227 0.62 -0.9 2,677,703 + Shewana3_2227 0.80 -0.4 2,677,902 - +1.5 2,678,063 + -0.1 2,678,276 + Shewana3_2228 0.13 +0.5 2,678,284 - Shewana3_2228 0.13 +0.6 2,678,551 - Shewana3_2228 0.30 +1.0 2,678,567 + Shewana3_2228 0.31 -0.2 2,678,668 - Shewana3_2228 0.37 +0.7 2,678,719 - Shewana3_2228 0.40 +0.8
Or see this region's nucleotide sequence