Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2227

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2225 and Shewana3_2226 are separated by 57 nucleotidesShewana3_2226 and Shewana3_2227 are separated by 240 nucleotidesShewana3_2227 and Shewana3_2228 are separated by 155 nucleotides Shewana3_2225: Shewana3_2225 - secretion protein HlyD family protein (RefSeq), at 2,675,095 to 2,676,150 _2225 Shewana3_2226: Shewana3_2226 - MarR family transcriptional regulator (RefSeq), at 2,676,208 to 2,676,642 _2226 Shewana3_2227: Shewana3_2227 - diguanylate cyclase (RefSeq), at 2,676,883 to 2,677,911 _2227 Shewana3_2228: Shewana3_2228 - sulfatase (RefSeq), at 2,678,067 to 2,679,692 _2228 Position (kb) 2676 2677 2678Strain fitness (log2 ratio) -1 0 1 2at 2676.260 kb on - strand, within Shewana3_2226at 2676.292 kb on + strand, within Shewana3_2226at 2676.405 kb on + strand, within Shewana3_2226at 2676.418 kb on - strand, within Shewana3_2226at 2676.450 kb on + strand, within Shewana3_2226at 2676.491 kb on - strand, within Shewana3_2226at 2676.612 kb on - strandat 2677.065 kb on + strand, within Shewana3_2227at 2677.149 kb on + strand, within Shewana3_2227at 2677.199 kb on + strand, within Shewana3_2227at 2677.214 kb on - strand, within Shewana3_2227at 2677.245 kb on + strand, within Shewana3_2227at 2677.524 kb on + strand, within Shewana3_2227at 2677.524 kb on + strand, within Shewana3_2227at 2677.703 kb on + strand, within Shewana3_2227at 2677.902 kb on - strandat 2678.063 kb on + strandat 2678.276 kb on + strand, within Shewana3_2228at 2678.284 kb on - strand, within Shewana3_2228at 2678.551 kb on - strand, within Shewana3_2228at 2678.567 kb on + strand, within Shewana3_2228at 2678.668 kb on - strand, within Shewana3_2228at 2678.719 kb on - strand, within Shewana3_2228

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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2,676,260 - Shewana3_2226 0.12 +0.7
2,676,292 + Shewana3_2226 0.19 -0.7
2,676,405 + Shewana3_2226 0.45 +0.5
2,676,418 - Shewana3_2226 0.48 +0.4
2,676,450 + Shewana3_2226 0.56 +0.5
2,676,491 - Shewana3_2226 0.65 +2.0
2,676,612 - -0.1
2,677,065 + Shewana3_2227 0.18 +0.5
2,677,149 + Shewana3_2227 0.26 -0.1
2,677,199 + Shewana3_2227 0.31 +2.5
2,677,214 - Shewana3_2227 0.32 -1.7
2,677,245 + Shewana3_2227 0.35 +0.5
2,677,524 + Shewana3_2227 0.62 -1.1
2,677,524 + Shewana3_2227 0.62 -0.9
2,677,703 + Shewana3_2227 0.80 -0.4
2,677,902 - +1.5
2,678,063 + -0.1
2,678,276 + Shewana3_2228 0.13 +0.5
2,678,284 - Shewana3_2228 0.13 +0.6
2,678,551 - Shewana3_2228 0.30 +1.0
2,678,567 + Shewana3_2228 0.31 -0.2
2,678,668 - Shewana3_2228 0.37 +0.7
2,678,719 - Shewana3_2228 0.40 +0.8

Or see this region's nucleotide sequence