Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2218

Experiment: syringaldehyde 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 1 mM
2,663,779	-		Shewana3_2216	0.77	-0.4
2,663,951	-		Shewana3_2216	0.86	-0.7
2,664,059	-				+0.1
2,664,134	-				-0.1
2,664,141	-				+0.6
2,664,288	+				-0.6
2,664,518	-		Shewana3_2217	0.55	-1.9
2,664,548	+		Shewana3_2217	0.61	+0.5
2,664,669	+		Shewana3_2217	0.84	-0.9
2,664,709	+				-0.1
2,664,717	-				+2.5
2,664,889	-				+0.2
2,665,320	+		Shewana3_2218	0.26	+1.5
2,665,379	-		Shewana3_2218	0.29	+0.5
2,665,441	-		Shewana3_2218	0.32	+0.5
2,665,464	-		Shewana3_2218	0.33	+1.0
2,665,560	-		Shewana3_2218	0.38	+0.5
2,665,781	-		Shewana3_2218	0.48	+1.5
2,665,796	-		Shewana3_2218	0.49	-0.4
2,665,836	-		Shewana3_2218	0.51	+1.2
2,665,881	+		Shewana3_2218	0.53	+1.9
2,665,883	+		Shewana3_2218	0.53	+0.3
2,665,914	-		Shewana3_2218	0.54	-1.3
2,665,997	+		Shewana3_2218	0.58	+2.0
2,666,074	-		Shewana3_2218	0.62	+0.5
2,666,210	-		Shewana3_2218	0.68	+0.9
2,666,321	-		Shewana3_2218	0.74	+0.0
2,666,690	+				-1.3
2,666,698	-				+0.2
2,666,881	-				+0.4
2,666,962	-		Shewana3_2219	0.18	-1.0
2,667,062	-		Shewana3_2219	0.45	+0.7
2,667,073	+		Shewana3_2219	0.48	-0.1
2,667,073	+		Shewana3_2219	0.48	+1.9
2,667,081	-		Shewana3_2219	0.50	+0.2
2,667,081	-		Shewana3_2219	0.50	+3.0
2,667,082	-		Shewana3_2219	0.51	-0.5
2,667,143	+		Shewana3_2219	0.67	-0.1
2,667,143	+		Shewana3_2219	0.67	+1.5
2,667,143	+		Shewana3_2219	0.67	+1.5
2,667,151	-		Shewana3_2219	0.69	-0.4
2,667,201	-		Shewana3_2219	0.83	+0.1
2,667,201	-		Shewana3_2219	0.83	-1.2
2,667,201	-		Shewana3_2219	0.83	+0.5
2,667,201	-		Shewana3_2219	0.83	-0.9
2,667,202	-		Shewana3_2219	0.83	-0.1
2,667,225	-		Shewana3_2219	0.90	+0.9
2,667,229	-				+0.2
2,667,388	-				-0.5
2,667,393	-				+0.6
2,667,396	+				-0.1
2,667,403	-				+1.2
2,667,403	-				+0.6
2,667,403	-				+1.0
2,667,404	-				-1.1
2,667,404	-				+0.2
2,667,404	-				+0.5
2,667,404	-				-0.4
2,667,404	-				-0.1
2,667,416	-				+0.1
2,667,416	-				-0.9
2,667,445	-		Shewana3_2220	0.11	+1.1
2,667,465	+		Shewana3_2220	0.12	+0.2
2,667,465	+		Shewana3_2220	0.12	+0.5
2,667,465	+		Shewana3_2220	0.12	-0.1
2,667,465	+		Shewana3_2220	0.12	+0.5
2,667,465	+		Shewana3_2220	0.12	-0.1
2,667,473	-		Shewana3_2220	0.12	-0.0
2,667,473	-		Shewana3_2220	0.12	-0.3
2,667,473	-		Shewana3_2220	0.12	+0.1
2,667,473	-		Shewana3_2220	0.12	+0.2
2,667,473	-		Shewana3_2220	0.12	-0.4
2,667,473	-		Shewana3_2220	0.12	-0.7
2,667,473	-		Shewana3_2220	0.12	+0.5
2,667,473	-		Shewana3_2220	0.12	-0.4
2,667,473	-		Shewana3_2220	0.12	-0.7
2,667,473	-		Shewana3_2220	0.12	+0.7
2,667,473	-		Shewana3_2220	0.12	+0.7
2,667,473	-		Shewana3_2220	0.12	-1.0
2,667,473	-		Shewana3_2220	0.12	-0.9
2,667,473	-		Shewana3_2220	0.12	+0.0
2,667,473	-		Shewana3_2220	0.12	+0.1
2,667,473	-		Shewana3_2220	0.12	+1.8
2,667,473	-		Shewana3_2220	0.12	-0.6
2,667,473	-		Shewana3_2220	0.12	+0.5
2,667,475	+		Shewana3_2220	0.12	-0.5
2,667,475	+		Shewana3_2220	0.12	+1.5
2,667,483	-		Shewana3_2220	0.13	+2.5
2,667,483	-		Shewana3_2220	0.13	+0.0
2,667,483	-		Shewana3_2220	0.13	+0.5
2,667,483	-		Shewana3_2220	0.13	-0.9
2,667,483	-		Shewana3_2220	0.13	-0.7
2,667,483	-		Shewana3_2220	0.13	+0.5
2,667,503	+		Shewana3_2220	0.14	-0.1
2,667,511	-		Shewana3_2220	0.15	+0.8
2,667,518	+		Shewana3_2220	0.15	-0.1
2,667,518	-		Shewana3_2220	0.15	-0.8
2,667,518	-		Shewana3_2220	0.15	-0.9
2,667,524	-		Shewana3_2220	0.15	+0.7
2,667,524	-		Shewana3_2220	0.15	+0.6
2,667,526	+		Shewana3_2220	0.15	-1.9
2,667,534	-		Shewana3_2220	0.16	-0.9
2,667,534	-		Shewana3_2220	0.16	+1.7
2,667,534	-		Shewana3_2220	0.16	-0.9
2,667,534	-		Shewana3_2220	0.16	+1.2
2,667,534	-		Shewana3_2220	0.16	-0.1
2,667,541	-		Shewana3_2220	0.16	-0.9
2,667,588	-		Shewana3_2220	0.19	-0.1
2,667,708	-		Shewana3_2220	0.26	+1.2
2,667,708	-		Shewana3_2220	0.26	+0.1
2,667,811	+		Shewana3_2220	0.32	+0.5
2,667,864	+		Shewana3_2220	0.35	-0.5
2,667,864	+		Shewana3_2220	0.35	+0.5
2,667,864	+		Shewana3_2220	0.35	-0.1
2,667,864	+		Shewana3_2220	0.35	-1.1
2,667,864	+		Shewana3_2220	0.35	+0.2
2,667,872	-		Shewana3_2220	0.36	+0.3
2,667,872	-		Shewana3_2220	0.36	-0.4
2,667,872	-		Shewana3_2220	0.36	-0.5
2,667,872	-		Shewana3_2220	0.36	-0.5
2,667,872	-		Shewana3_2220	0.36	+0.2
2,667,872	-		Shewana3_2220	0.36	-0.6