Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2216 and Shewana3_2217 are separated by 5 nucleotides Shewana3_2217 and Shewana3_2218 are separated by 14 nucleotides
Shewana3_2216: Shewana3_2216 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,662,258 to 2,664,231
_2216
Shewana3_2217: Shewana3_2217 - CheW protein (RefSeq), at 2,664,237 to 2,664,749
_2217
Shewana3_2218: Shewana3_2218 - CheA signal transduction histidine kinases (RefSeq), at 2,664,764 to 2,666,878
_2218
Position (kb)
2664
2665 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2663.237 kb on + strand, within Shewana3_2216 at 2663.490 kb on - strand, within Shewana3_2216 at 2663.779 kb on - strand, within Shewana3_2216 at 2663.951 kb on - strand, within Shewana3_2216 at 2664.059 kb on - strand at 2664.134 kb on - strand at 2664.141 kb on - strand at 2664.288 kb on + strand at 2664.518 kb on - strand, within Shewana3_2217 at 2664.548 kb on + strand, within Shewana3_2217 at 2664.669 kb on + strand, within Shewana3_2217 at 2664.709 kb on + strand at 2664.717 kb on - strand at 2664.889 kb on - strand at 2665.320 kb on + strand, within Shewana3_2218 at 2665.379 kb on - strand, within Shewana3_2218 at 2665.441 kb on - strand, within Shewana3_2218 at 2665.464 kb on - strand, within Shewana3_2218 at 2665.560 kb on - strand, within Shewana3_2218
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,663,237 + Shewana3_2216 0.50 -0.1 2,663,490 - Shewana3_2216 0.62 +1.3 2,663,779 - Shewana3_2216 0.77 -0.4 2,663,951 - Shewana3_2216 0.86 -0.7 2,664,059 - +0.1 2,664,134 - -0.1 2,664,141 - +0.6 2,664,288 + -0.6 2,664,518 - Shewana3_2217 0.55 -1.9 2,664,548 + Shewana3_2217 0.61 +0.5 2,664,669 + Shewana3_2217 0.84 -0.9 2,664,709 + -0.1 2,664,717 - +2.5 2,664,889 - +0.2 2,665,320 + Shewana3_2218 0.26 +1.5 2,665,379 - Shewana3_2218 0.29 +0.5 2,665,441 - Shewana3_2218 0.32 +0.5 2,665,464 - Shewana3_2218 0.33 +1.0 2,665,560 - Shewana3_2218 0.38 +0.5
Or see this region's nucleotide sequence