Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2217
Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 1 mM |
---|---|---|---|---|---|
remove | |||||
2,663,237 | + | Shewana3_2216 | 0.50 | -0.1 | |
2,663,490 | - | Shewana3_2216 | 0.62 | +1.3 | |
2,663,779 | - | Shewana3_2216 | 0.77 | -0.4 | |
2,663,951 | - | Shewana3_2216 | 0.86 | -0.7 | |
2,664,059 | - | +0.1 | |||
2,664,134 | - | -0.1 | |||
2,664,141 | - | +0.6 | |||
2,664,288 | + | -0.6 | |||
2,664,518 | - | Shewana3_2217 | 0.55 | -1.9 | |
2,664,548 | + | Shewana3_2217 | 0.61 | +0.5 | |
2,664,669 | + | Shewana3_2217 | 0.84 | -0.9 | |
2,664,709 | + | -0.1 | |||
2,664,717 | - | +2.5 | |||
2,664,889 | - | +0.2 | |||
2,665,320 | + | Shewana3_2218 | 0.26 | +1.5 | |
2,665,379 | - | Shewana3_2218 | 0.29 | +0.5 | |
2,665,441 | - | Shewana3_2218 | 0.32 | +0.5 | |
2,665,464 | - | Shewana3_2218 | 0.33 | +1.0 | |
2,665,560 | - | Shewana3_2218 | 0.38 | +0.5 |
Or see this region's nucleotide sequence