Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2217

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2216 and Shewana3_2217 are separated by 5 nucleotidesShewana3_2217 and Shewana3_2218 are separated by 14 nucleotides Shewana3_2216: Shewana3_2216 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,662,258 to 2,664,231 _2216 Shewana3_2217: Shewana3_2217 - CheW protein (RefSeq), at 2,664,237 to 2,664,749 _2217 Shewana3_2218: Shewana3_2218 - CheA signal transduction histidine kinases (RefSeq), at 2,664,764 to 2,666,878 _2218 Position (kb) 2664 2665Strain fitness (log2 ratio) -2 -1 0 1 2at 2663.237 kb on + strand, within Shewana3_2216at 2663.490 kb on - strand, within Shewana3_2216at 2663.779 kb on - strand, within Shewana3_2216at 2663.951 kb on - strand, within Shewana3_2216at 2664.059 kb on - strandat 2664.134 kb on - strandat 2664.141 kb on - strandat 2664.288 kb on + strandat 2664.518 kb on - strand, within Shewana3_2217at 2664.548 kb on + strand, within Shewana3_2217at 2664.669 kb on + strand, within Shewana3_2217at 2664.709 kb on + strandat 2664.717 kb on - strandat 2664.889 kb on - strandat 2665.320 kb on + strand, within Shewana3_2218at 2665.379 kb on - strand, within Shewana3_2218at 2665.441 kb on - strand, within Shewana3_2218at 2665.464 kb on - strand, within Shewana3_2218at 2665.560 kb on - strand, within Shewana3_2218

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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2,663,237 + Shewana3_2216 0.50 -0.1
2,663,490 - Shewana3_2216 0.62 +1.3
2,663,779 - Shewana3_2216 0.77 -0.4
2,663,951 - Shewana3_2216 0.86 -0.7
2,664,059 - +0.1
2,664,134 - -0.1
2,664,141 - +0.6
2,664,288 + -0.6
2,664,518 - Shewana3_2217 0.55 -1.9
2,664,548 + Shewana3_2217 0.61 +0.5
2,664,669 + Shewana3_2217 0.84 -0.9
2,664,709 + -0.1
2,664,717 - +2.5
2,664,889 - +0.2
2,665,320 + Shewana3_2218 0.26 +1.5
2,665,379 - Shewana3_2218 0.29 +0.5
2,665,441 - Shewana3_2218 0.32 +0.5
2,665,464 - Shewana3_2218 0.33 +1.0
2,665,560 - Shewana3_2218 0.38 +0.5

Or see this region's nucleotide sequence