Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2197 and Shewana3_2198 are separated by 340 nucleotides Shewana3_2198 and Shewana3_2199 are separated by 10 nucleotides Shewana3_2199 and Shewana3_2200 are separated by 91 nucleotides
Shewana3_2197: Shewana3_2197 - beta-lactamase domain-containing protein (RefSeq), at 2,637,057 to 2,637,953
_2197
Shewana3_2198: Shewana3_2198 - hypothetical protein (RefSeq), at 2,638,294 to 2,639,196
_2198
Shewana3_2199: Shewana3_2199 - hypothetical protein (RefSeq), at 2,639,207 to 2,639,989
_2199
Shewana3_2200: Shewana3_2200 - response regulator receiver protein (RefSeq), at 2,640,081 to 2,642,006
_2200
Position (kb)
2638
2639
2640 Strain fitness (log2 ratio)
-2
-1
0
1 at 2637.345 kb on - strand, within Shewana3_2197 at 2637.460 kb on - strand, within Shewana3_2197 at 2637.496 kb on + strand, within Shewana3_2197 at 2638.065 kb on - strand at 2638.268 kb on - strand at 2638.284 kb on - strand at 2638.361 kb on - strand at 2638.633 kb on + strand, within Shewana3_2198 at 2638.641 kb on - strand, within Shewana3_2198 at 2638.706 kb on + strand, within Shewana3_2198 at 2638.783 kb on + strand, within Shewana3_2198 at 2638.966 kb on - strand, within Shewana3_2198 at 2639.169 kb on + strand at 2639.300 kb on - strand, within Shewana3_2199 at 2639.319 kb on + strand, within Shewana3_2199 at 2639.430 kb on + strand, within Shewana3_2199 at 2639.640 kb on - strand, within Shewana3_2199 at 2639.766 kb on - strand, within Shewana3_2199 at 2640.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,637,345 - Shewana3_2197 0.32 -0.5 2,637,460 - Shewana3_2197 0.45 +0.5 2,637,496 + Shewana3_2197 0.49 -0.1 2,638,065 - -0.5 2,638,268 - +0.5 2,638,284 - -0.1 2,638,361 - -0.1 2,638,633 + Shewana3_2198 0.38 +1.5 2,638,641 - Shewana3_2198 0.38 -1.3 2,638,706 + Shewana3_2198 0.46 -1.1 2,638,783 + Shewana3_2198 0.54 +0.5 2,638,966 - Shewana3_2198 0.74 +1.5 2,639,169 + -0.1 2,639,300 - Shewana3_2199 0.12 +1.5 2,639,319 + Shewana3_2199 0.14 +1.5 2,639,430 + Shewana3_2199 0.28 +1.5 2,639,640 - Shewana3_2199 0.55 -0.4 2,639,766 - Shewana3_2199 0.71 -2.1 2,640,164 + +0.5
Or see this region's nucleotide sequence