Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2162 and Shewana3_R0092 are separated by 125 nucleotides Shewana3_R0092 and Shewana3_R0093 are separated by 39 nucleotides Shewana3_R0093 and Shewana3_R0094 are separated by 130 nucleotides Shewana3_R0094 and Shewana3_2163 are separated by 195 nucleotides Shewana3_2163 and Shewana3_2164 are separated by 188 nucleotides Shewana3_2164 and Shewana3_2165 overlap by 4 nucleotides
Shewana3_2162: Shewana3_2162 - hypothetical protein (RefSeq), at 2,590,896 to 2,591,384
_2162
Shewana3_R0092: Shewana3_R0092 - tRNA-Tyr (RefSeq), at 2,591,510 to 2,591,594
_R0092
Shewana3_R0093: Shewana3_R0093 - tRNA-Tyr (RefSeq), at 2,591,634 to 2,591,718
_R0093
Shewana3_R0094: Shewana3_R0094 - tRNA-Tyr (RefSeq), at 2,591,849 to 2,591,933
_R0094
Shewana3_2163: Shewana3_2163 - radical activating enzyme (RefSeq), at 2,592,129 to 2,592,797
_2163
Shewana3_2164: Shewana3_2164 - queuosine biosynthesis protein QueC (RefSeq), at 2,592,986 to 2,593,705
_2164
Shewana3_2165: Shewana3_2165 - rhomboid family protein (RefSeq), at 2,593,702 to 2,594,307
_2165
Position (kb)
2592
2593 Strain fitness (log2 ratio)
-1
0
1 at 2592.094 kb on + strand at 2592.367 kb on - strand, within Shewana3_2163 at 2592.513 kb on - strand, within Shewana3_2163 at 2592.556 kb on + strand, within Shewana3_2163 at 2592.627 kb on + strand, within Shewana3_2163 at 2592.920 kb on - strand at 2593.225 kb on - strand, within Shewana3_2164 at 2593.278 kb on + strand, within Shewana3_2164 at 2593.329 kb on - strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.550 kb on + strand, within Shewana3_2164 at 2593.558 kb on - strand, within Shewana3_2164 at 2593.694 kb on + strand at 2593.773 kb on + strand, within Shewana3_2165
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,592,094 + +1.5 2,592,367 - Shewana3_2163 0.36 +0.3 2,592,513 - Shewana3_2163 0.57 +1.1 2,592,556 + Shewana3_2163 0.64 +1.5 2,592,627 + Shewana3_2163 0.74 +0.5 2,592,920 - -0.8 2,593,225 - Shewana3_2164 0.33 +0.9 2,593,278 + Shewana3_2164 0.41 +0.5 2,593,329 - Shewana3_2164 0.48 +1.5 2,593,550 + Shewana3_2164 0.78 +0.8 2,593,550 + Shewana3_2164 0.78 +0.0 2,593,550 + Shewana3_2164 0.78 +0.4 2,593,558 - Shewana3_2164 0.79 -0.8 2,593,694 + +0.5 2,593,773 + Shewana3_2165 0.12 +0.2
Or see this region's nucleotide sequence