Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2163

Experiment: syringaldehyde 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2162 and Shewana3_R0092 are separated by 125 nucleotidesShewana3_R0092 and Shewana3_R0093 are separated by 39 nucleotidesShewana3_R0093 and Shewana3_R0094 are separated by 130 nucleotidesShewana3_R0094 and Shewana3_2163 are separated by 195 nucleotidesShewana3_2163 and Shewana3_2164 are separated by 188 nucleotidesShewana3_2164 and Shewana3_2165 overlap by 4 nucleotides Shewana3_2162: Shewana3_2162 - hypothetical protein (RefSeq), at 2,590,896 to 2,591,384 _2162 Shewana3_R0092: Shewana3_R0092 - tRNA-Tyr (RefSeq), at 2,591,510 to 2,591,594 _R0092 Shewana3_R0093: Shewana3_R0093 - tRNA-Tyr (RefSeq), at 2,591,634 to 2,591,718 _R0093 Shewana3_R0094: Shewana3_R0094 - tRNA-Tyr (RefSeq), at 2,591,849 to 2,591,933 _R0094 Shewana3_2163: Shewana3_2163 - radical activating enzyme (RefSeq), at 2,592,129 to 2,592,797 _2163 Shewana3_2164: Shewana3_2164 - queuosine biosynthesis protein QueC (RefSeq), at 2,592,986 to 2,593,705 _2164 Shewana3_2165: Shewana3_2165 - rhomboid family protein (RefSeq), at 2,593,702 to 2,594,307 _2165 Position (kb) 2592 2593Strain fitness (log2 ratio) -1 0 1at 2592.094 kb on + strandat 2592.367 kb on - strand, within Shewana3_2163at 2592.513 kb on - strand, within Shewana3_2163at 2592.556 kb on + strand, within Shewana3_2163at 2592.627 kb on + strand, within Shewana3_2163at 2592.920 kb on - strandat 2593.225 kb on - strand, within Shewana3_2164at 2593.278 kb on + strand, within Shewana3_2164at 2593.329 kb on - strand, within Shewana3_2164at 2593.550 kb on + strand, within Shewana3_2164at 2593.550 kb on + strand, within Shewana3_2164at 2593.550 kb on + strand, within Shewana3_2164at 2593.558 kb on - strand, within Shewana3_2164at 2593.694 kb on + strandat 2593.773 kb on + strand, within Shewana3_2165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
remove
2,592,094 + +1.5
2,592,367 - Shewana3_2163 0.36 +0.3
2,592,513 - Shewana3_2163 0.57 +1.1
2,592,556 + Shewana3_2163 0.64 +1.5
2,592,627 + Shewana3_2163 0.74 +0.5
2,592,920 - -0.8
2,593,225 - Shewana3_2164 0.33 +0.9
2,593,278 + Shewana3_2164 0.41 +0.5
2,593,329 - Shewana3_2164 0.48 +1.5
2,593,550 + Shewana3_2164 0.78 +0.8
2,593,550 + Shewana3_2164 0.78 +0.0
2,593,550 + Shewana3_2164 0.78 +0.4
2,593,558 - Shewana3_2164 0.79 -0.8
2,593,694 + +0.5
2,593,773 + Shewana3_2165 0.12 +0.2

Or see this region's nucleotide sequence