Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2154 and Shewana3_2155 are separated by 15 nucleotides Shewana3_2155 and Shewana3_2156 are separated by 218 nucleotides
Shewana3_2154: Shewana3_2154 - acyl-CoA dehydrogenase (RefSeq), at 2,580,903 to 2,583,182
_2154
Shewana3_2155: Shewana3_2155 - TetR family transcriptional regulator (RefSeq), at 2,583,198 to 2,583,836
_2155
Shewana3_2156: Shewana3_2156 - peptidase M2, peptidyl-dipeptidase A (RefSeq), at 2,584,055 to 2,585,914
_2156
Position (kb)
2583
2584 Strain fitness (log2 ratio)
-2
-1
0
1 at 2582.451 kb on + strand, within Shewana3_2154 at 2582.614 kb on + strand, within Shewana3_2154 at 2582.617 kb on - strand, within Shewana3_2154 at 2582.692 kb on - strand, within Shewana3_2154 at 2582.838 kb on + strand, within Shewana3_2154 at 2582.916 kb on - strand, within Shewana3_2154 at 2582.978 kb on - strand at 2583.183 kb on + strand at 2583.442 kb on - strand, within Shewana3_2155 at 2583.554 kb on - strand, within Shewana3_2155 at 2583.566 kb on - strand, within Shewana3_2155 at 2583.655 kb on - strand, within Shewana3_2155 at 2583.668 kb on - strand, within Shewana3_2155 at 2583.668 kb on - strand, within Shewana3_2155 at 2584.093 kb on + strand at 2584.093 kb on + strand at 2584.093 kb on + strand at 2584.095 kb on + strand at 2584.103 kb on - strand at 2584.107 kb on + strand at 2584.115 kb on - strand at 2584.201 kb on - strand at 2584.438 kb on - strand, within Shewana3_2156 at 2584.504 kb on + strand, within Shewana3_2156 at 2584.517 kb on + strand, within Shewana3_2156 at 2584.517 kb on + strand, within Shewana3_2156 at 2584.525 kb on - strand, within Shewana3_2156 at 2584.551 kb on - strand, within Shewana3_2156 at 2584.673 kb on - strand, within Shewana3_2156
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,582,451 + Shewana3_2154 0.68 -1.7 2,582,614 + Shewana3_2154 0.75 +1.5 2,582,617 - Shewana3_2154 0.75 -0.1 2,582,692 - Shewana3_2154 0.78 -0.1 2,582,838 + Shewana3_2154 0.85 -0.1 2,582,916 - Shewana3_2154 0.88 +0.6 2,582,978 - -2.3 2,583,183 + +0.5 2,583,442 - Shewana3_2155 0.38 -0.1 2,583,554 - Shewana3_2155 0.56 +1.1 2,583,566 - Shewana3_2155 0.58 +0.8 2,583,655 - Shewana3_2155 0.72 +0.2 2,583,668 - Shewana3_2155 0.74 +0.9 2,583,668 - Shewana3_2155 0.74 +0.5 2,584,093 + +0.5 2,584,093 + -1.3 2,584,093 + +1.0 2,584,095 + -0.5 2,584,103 - +0.9 2,584,107 + -0.3 2,584,115 - -0.8 2,584,201 - -0.3 2,584,438 - Shewana3_2156 0.21 +0.9 2,584,504 + Shewana3_2156 0.24 +0.8 2,584,517 + Shewana3_2156 0.25 -0.1 2,584,517 + Shewana3_2156 0.25 -0.7 2,584,525 - Shewana3_2156 0.25 +1.5 2,584,551 - Shewana3_2156 0.27 +0.9 2,584,673 - Shewana3_2156 0.33 -0.5
Or see this region's nucleotide sequence