Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2098
Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 1 mM |
|---|---|---|---|---|---|
| remove | |||||
| 2,520,719 | - | mukB | Shewana3_2097 | 0.79 | +1.6 |
| 2,521,085 | + | mukB | Shewana3_2097 | 0.87 | +0.4 |
| 2,521,448 | + | +1.3 | |||
| 2,521,496 | + | -0.4 | |||
| 2,521,680 | - | -0.4 | |||
| 2,521,747 | + | +0.3 | |||
| 2,521,794 | + | Shewana3_2098 | 0.14 | +0.6 | |
| 2,522,088 | + | Shewana3_2098 | 0.45 | -0.5 | |
| 2,522,094 | - | Shewana3_2098 | 0.45 | +1.6 | |
| 2,522,230 | - | Shewana3_2098 | 0.60 | -0.0 | |
| 2,522,602 | + | -0.0 | |||
| 2,522,835 | + | +1.1 | |||
| 2,522,860 | + | -1.0 | |||
| 2,522,866 | + | -0.7 | |||
| 2,522,866 | + | -0.0 | |||
| 2,522,872 | + | +1.8 | |||
| 2,522,969 | + | Shewana3_2099 | 0.13 | -0.3 | |
| 2,523,002 | - | Shewana3_2099 | 0.15 | +1.5 | |
| 2,523,494 | - | Shewana3_2099 | 0.53 | +0.5 | |
| 2,523,519 | - | Shewana3_2099 | 0.55 | +1.5 | |
| 2,523,538 | + | Shewana3_2099 | 0.56 | +0.5 |
Or see this region's nucleotide sequence