Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2090 and Shewana3_2091 overlap by 4 nucleotides Shewana3_2091 and Shewana3_2092 are separated by 2 nucleotides
Shewana3_2090: Shewana3_2090 - formate dehydrogenase beta subunit (RefSeq), at 2,509,801 to 2,510,703
_2090
Shewana3_2091: Shewana3_2091 - formate dehydrogenase gamma subunit (RefSeq), at 2,510,700 to 2,511,323
_2091
Shewana3_2092: Shewana3_2092 - formate dehydrogenase accessory protein FdhE (RefSeq), at 2,511,326 to 2,512,225
_2092
Position (kb)
2511
2512
2513 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2510.426 kb on + strand, within Shewana3_2090 at 2510.569 kb on + strand, within Shewana3_2090 at 2510.820 kb on - strand, within Shewana3_2091 at 2510.984 kb on - strand, within Shewana3_2091 at 2511.078 kb on + strand, within Shewana3_2091 at 2511.115 kb on - strand, within Shewana3_2091 at 2511.154 kb on + strand, within Shewana3_2091 at 2511.209 kb on - strand, within Shewana3_2091 at 2511.269 kb on + strand at 2511.604 kb on - strand, within Shewana3_2092 at 2511.671 kb on + strand, within Shewana3_2092 at 2511.681 kb on + strand, within Shewana3_2092 at 2511.691 kb on + strand, within Shewana3_2092 at 2511.763 kb on + strand, within Shewana3_2092 at 2511.864 kb on - strand, within Shewana3_2092 at 2511.872 kb on + strand, within Shewana3_2092 at 2511.911 kb on - strand, within Shewana3_2092 at 2511.931 kb on - strand, within Shewana3_2092 at 2512.033 kb on + strand, within Shewana3_2092 at 2512.758 kb on + strand at 2512.779 kb on - strand at 2512.930 kb on + strand at 2513.140 kb on + strand at 2513.143 kb on - strand at 2513.143 kb on - strand at 2513.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,510,426 + Shewana3_2090 0.69 +0.8 2,510,569 + Shewana3_2090 0.85 -1.5 2,510,820 - Shewana3_2091 0.19 +2.4 2,510,984 - Shewana3_2091 0.46 +0.6 2,511,078 + Shewana3_2091 0.61 -0.1 2,511,115 - Shewana3_2091 0.67 +0.6 2,511,154 + Shewana3_2091 0.73 +1.0 2,511,209 - Shewana3_2091 0.82 -0.4 2,511,269 + -0.9 2,511,604 - Shewana3_2092 0.31 +0.9 2,511,671 + Shewana3_2092 0.38 +1.4 2,511,681 + Shewana3_2092 0.39 +0.7 2,511,691 + Shewana3_2092 0.41 +0.6 2,511,763 + Shewana3_2092 0.49 +1.9 2,511,864 - Shewana3_2092 0.60 -0.0 2,511,872 + Shewana3_2092 0.61 +1.6 2,511,911 - Shewana3_2092 0.65 +1.0 2,511,931 - Shewana3_2092 0.67 +0.6 2,512,033 + Shewana3_2092 0.79 -0.2 2,512,758 + -1.8 2,512,779 - +0.6 2,512,930 + -0.4 2,513,140 + +1.0 2,513,143 - +0.6 2,513,143 - -0.0 2,513,143 - +1.6
Or see this region's nucleotide sequence