Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2091

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2089 and Shewana3_2090 are separated by 2 nucleotidesShewana3_2090 and Shewana3_2091 overlap by 4 nucleotidesShewana3_2091 and Shewana3_2092 are separated by 2 nucleotides Shewana3_2089: Shewana3_2089 - formate dehydrogenase alpha subunit (RefSeq), at 2,506,781 to 2,509,798 _2089 Shewana3_2090: Shewana3_2090 - formate dehydrogenase beta subunit (RefSeq), at 2,509,801 to 2,510,703 _2090 Shewana3_2091: Shewana3_2091 - formate dehydrogenase gamma subunit (RefSeq), at 2,510,700 to 2,511,323 _2091 Shewana3_2092: Shewana3_2092 - formate dehydrogenase accessory protein FdhE (RefSeq), at 2,511,326 to 2,512,225 _2092 Position (kb) 2510 2511 2512Strain fitness (log2 ratio) -2 -1 0 1 2at 2509.722 kb on - strandat 2510.103 kb on - strand, within Shewana3_2090at 2510.108 kb on - strand, within Shewana3_2090at 2510.128 kb on - strand, within Shewana3_2090at 2510.132 kb on + strand, within Shewana3_2090at 2510.426 kb on + strand, within Shewana3_2090at 2510.569 kb on + strand, within Shewana3_2090at 2510.820 kb on - strand, within Shewana3_2091at 2510.984 kb on - strand, within Shewana3_2091at 2511.078 kb on + strand, within Shewana3_2091at 2511.115 kb on - strand, within Shewana3_2091at 2511.154 kb on + strand, within Shewana3_2091at 2511.209 kb on - strand, within Shewana3_2091at 2511.269 kb on + strandat 2511.604 kb on - strand, within Shewana3_2092at 2511.671 kb on + strand, within Shewana3_2092at 2511.681 kb on + strand, within Shewana3_2092at 2511.691 kb on + strand, within Shewana3_2092at 2511.763 kb on + strand, within Shewana3_2092at 2511.864 kb on - strand, within Shewana3_2092at 2511.872 kb on + strand, within Shewana3_2092at 2511.911 kb on - strand, within Shewana3_2092at 2511.931 kb on - strand, within Shewana3_2092at 2512.033 kb on + strand, within Shewana3_2092

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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2,509,722 - -1.6
2,510,103 - Shewana3_2090 0.33 +1.6
2,510,108 - Shewana3_2090 0.34 +0.6
2,510,128 - Shewana3_2090 0.36 -1.8
2,510,132 + Shewana3_2090 0.37 -0.4
2,510,426 + Shewana3_2090 0.69 +0.8
2,510,569 + Shewana3_2090 0.85 -1.5
2,510,820 - Shewana3_2091 0.19 +2.4
2,510,984 - Shewana3_2091 0.46 +0.6
2,511,078 + Shewana3_2091 0.61 -0.1
2,511,115 - Shewana3_2091 0.67 +0.6
2,511,154 + Shewana3_2091 0.73 +1.0
2,511,209 - Shewana3_2091 0.82 -0.4
2,511,269 + -0.9
2,511,604 - Shewana3_2092 0.31 +0.9
2,511,671 + Shewana3_2092 0.38 +1.4
2,511,681 + Shewana3_2092 0.39 +0.7
2,511,691 + Shewana3_2092 0.41 +0.6
2,511,763 + Shewana3_2092 0.49 +1.9
2,511,864 - Shewana3_2092 0.60 -0.0
2,511,872 + Shewana3_2092 0.61 +1.6
2,511,911 - Shewana3_2092 0.65 +1.0
2,511,931 - Shewana3_2092 0.67 +0.6
2,512,033 + Shewana3_2092 0.79 -0.2

Or see this region's nucleotide sequence