Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2061 and Shewana3_2062 are separated by 106 nucleotides Shewana3_2062 and Shewana3_R0088 are separated by 80 nucleotides Shewana3_R0088 and Shewana3_2063 are separated by 403 nucleotides
Shewana3_2061: Shewana3_2061 - putative DNA-binding transcriptional regulator (RefSeq), at 2,466,934 to 2,467,845
_2061
Shewana3_2062: Shewana3_2062 - inner membrane transport protein YdhC (RefSeq), at 2,467,952 to 2,469,223
_2062
Shewana3_R0088: Shewana3_R0088 - tRNA-Ser (RefSeq), at 2,469,304 to 2,469,394
_R0088
Shewana3_2063: Shewana3_2063 - hypothetical protein (RefSeq), at 2,469,798 to 2,470,328
_2063
Position (kb)
2467
2468
2469
2470 Strain fitness (log2 ratio)
-1
0
1 at 2467.140 kb on + strand, within Shewana3_2061 at 2467.411 kb on + strand, within Shewana3_2061 at 2467.555 kb on - strand, within Shewana3_2061 at 2467.668 kb on - strand, within Shewana3_2061 at 2467.668 kb on - strand, within Shewana3_2061 at 2468.141 kb on + strand, within Shewana3_2062 at 2468.304 kb on + strand, within Shewana3_2062 at 2468.625 kb on + strand, within Shewana3_2062 at 2468.785 kb on + strand, within Shewana3_2062 at 2468.796 kb on + strand, within Shewana3_2062 at 2469.071 kb on + strand, within Shewana3_2062 at 2469.553 kb on + strand at 2469.869 kb on - strand, within Shewana3_2063 at 2470.007 kb on + strand, within Shewana3_2063 at 2470.037 kb on + strand, within Shewana3_2063 at 2470.196 kb on - strand, within Shewana3_2063 at 2470.220 kb on + strand, within Shewana3_2063
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,467,140 + Shewana3_2061 0.23 -0.0 2,467,411 + Shewana3_2061 0.52 -0.0 2,467,555 - Shewana3_2061 0.68 +0.6 2,467,668 - Shewana3_2061 0.80 +0.4 2,467,668 - Shewana3_2061 0.80 -0.0 2,468,141 + Shewana3_2062 0.15 +0.7 2,468,304 + Shewana3_2062 0.28 +0.1 2,468,625 + Shewana3_2062 0.53 +0.7 2,468,785 + Shewana3_2062 0.65 +1.2 2,468,796 + Shewana3_2062 0.66 +0.4 2,469,071 + Shewana3_2062 0.88 +0.6 2,469,553 + +0.5 2,469,869 - Shewana3_2063 0.13 +0.3 2,470,007 + Shewana3_2063 0.39 -0.0 2,470,037 + Shewana3_2063 0.45 +0.6 2,470,196 - Shewana3_2063 0.75 -0.0 2,470,220 + Shewana3_2063 0.79 -0.0
Or see this region's nucleotide sequence