Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2036
Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 1 mM |
---|---|---|---|---|---|
remove | |||||
2,435,233 | - | Shewana3_2035 | 0.10 | +0.1 | |
2,435,292 | + | Shewana3_2035 | 0.16 | +0.8 | |
2,435,343 | - | Shewana3_2035 | 0.20 | -0.5 | |
2,435,459 | - | Shewana3_2035 | 0.31 | +0.1 | |
2,435,558 | + | Shewana3_2035 | 0.40 | -0.5 | |
2,435,680 | + | Shewana3_2035 | 0.51 | +0.2 | |
2,435,701 | + | Shewana3_2035 | 0.53 | -2.0 | |
2,435,709 | - | Shewana3_2035 | 0.54 | +1.5 | |
2,435,743 | - | Shewana3_2035 | 0.57 | -0.5 | |
2,435,989 | + | Shewana3_2035 | 0.79 | -0.3 | |
2,435,991 | + | Shewana3_2035 | 0.80 | -0.5 | |
2,436,105 | + | +0.9 | |||
2,436,106 | - | +3.1 | |||
2,436,343 | - | Shewana3_2036 | 0.20 | -0.8 | |
2,436,368 | - | Shewana3_2036 | 0.23 | -1.0 | |
2,436,707 | - | Shewana3_2036 | 0.75 | -0.6 | |
2,436,728 | + | Shewana3_2036 | 0.79 | -0.5 | |
2,436,791 | + | Shewana3_2036 | 0.88 | -0.5 | |
2,436,794 | - | Shewana3_2036 | 0.89 | +0.5 | |
2,437,094 | + | +0.5 | |||
2,437,417 | + | -0.6 | |||
2,437,632 | + | -0.5 | |||
2,437,640 | - | -0.5 | |||
2,437,711 | + | Shewana3_2037 | 0.11 | -0.0 | |
2,437,826 | - | Shewana3_2037 | 0.15 | -0.5 |
Or see this region's nucleotide sequence