Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2035 and Shewana3_2036 are separated by 2 nucleotides Shewana3_2036 and Shewana3_2037 are separated by 443 nucleotides
Shewana3_2035: Shewana3_2035 - metallo-beta-lactamase superfamily hydrolase (RefSeq), at 2,435,122 to 2,436,213
_2035
Shewana3_2036: Shewana3_2036 - hypothetical protein (RefSeq), at 2,436,216 to 2,436,866
_2036
Shewana3_2037: Shewana3_2037 - hypothetical protein (RefSeq), at 2,437,310 to 2,440,852
_2037
Position (kb)
2436
2437 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2435.233 kb on - strand, within Shewana3_2035 at 2435.292 kb on + strand, within Shewana3_2035 at 2435.343 kb on - strand, within Shewana3_2035 at 2435.459 kb on - strand, within Shewana3_2035 at 2435.558 kb on + strand, within Shewana3_2035 at 2435.680 kb on + strand, within Shewana3_2035 at 2435.701 kb on + strand, within Shewana3_2035 at 2435.709 kb on - strand, within Shewana3_2035 at 2435.743 kb on - strand, within Shewana3_2035 at 2435.989 kb on + strand, within Shewana3_2035 at 2435.991 kb on + strand, within Shewana3_2035 at 2436.105 kb on + strand at 2436.106 kb on - strand at 2436.343 kb on - strand, within Shewana3_2036 at 2436.368 kb on - strand, within Shewana3_2036 at 2436.707 kb on - strand, within Shewana3_2036 at 2436.728 kb on + strand, within Shewana3_2036 at 2436.791 kb on + strand, within Shewana3_2036 at 2436.794 kb on - strand, within Shewana3_2036 at 2437.094 kb on + strand at 2437.417 kb on + strand at 2437.632 kb on + strand at 2437.640 kb on - strand at 2437.711 kb on + strand, within Shewana3_2037 at 2437.826 kb on - strand, within Shewana3_2037
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,435,233 - Shewana3_2035 0.10 +0.1 2,435,292 + Shewana3_2035 0.16 +0.8 2,435,343 - Shewana3_2035 0.20 -0.5 2,435,459 - Shewana3_2035 0.31 +0.1 2,435,558 + Shewana3_2035 0.40 -0.5 2,435,680 + Shewana3_2035 0.51 +0.2 2,435,701 + Shewana3_2035 0.53 -2.0 2,435,709 - Shewana3_2035 0.54 +1.5 2,435,743 - Shewana3_2035 0.57 -0.5 2,435,989 + Shewana3_2035 0.79 -0.3 2,435,991 + Shewana3_2035 0.80 -0.5 2,436,105 + +0.9 2,436,106 - +3.1 2,436,343 - Shewana3_2036 0.20 -0.8 2,436,368 - Shewana3_2036 0.23 -1.0 2,436,707 - Shewana3_2036 0.75 -0.6 2,436,728 + Shewana3_2036 0.79 -0.5 2,436,791 + Shewana3_2036 0.88 -0.5 2,436,794 - Shewana3_2036 0.89 +0.5 2,437,094 + +0.5 2,437,417 + -0.6 2,437,632 + -0.5 2,437,640 - -0.5 2,437,711 + Shewana3_2037 0.11 -0.0 2,437,826 - Shewana3_2037 0.15 -0.5
Or see this region's nucleotide sequence