Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1970

Experiment: syringaldehyde 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1969 and Shewana3_1970 are separated by 485 nucleotidesShewana3_1970 and Shewana3_1971 are separated by 1 nucleotides Shewana3_1969: Shewana3_1969 - ribonucleotide-diphosphate reductase subunit alpha (RefSeq), at 2,343,289 to 2,345,577 _1969 Shewana3_1970: Shewana3_1970 - HAD family hydrolase (RefSeq), at 2,346,063 to 2,346,737 _1970 Shewana3_1971: Shewana3_1971 - 3-demethylubiquinone-9 3-methyltransferase (RefSeq), at 2,346,739 to 2,347,449 _1971 Position (kb) 2346 2347Strain fitness (log2 ratio) -1 0 1at 2346.117 kb on - strandat 2346.119 kb on + strandat 2346.127 kb on - strandat 2346.151 kb on + strand, within Shewana3_1970at 2346.176 kb on + strand, within Shewana3_1970at 2346.230 kb on + strand, within Shewana3_1970at 2346.295 kb on + strand, within Shewana3_1970at 2346.341 kb on + strand, within Shewana3_1970at 2346.356 kb on + strand, within Shewana3_1970at 2346.521 kb on + strandat 2346.545 kb on - strand, within Shewana3_1970at 2346.723 kb on - strandat 2347.511 kb on + strandat 2347.522 kb on + strandat 2347.530 kb on - strandat 2347.722 kb on + strandat 2347.727 kb on + strandat 2347.735 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
remove
2,346,117 - -0.5
2,346,119 + -0.5
2,346,127 - -0.0
2,346,151 + Shewana3_1970 0.13 +1.5
2,346,176 + Shewana3_1970 0.17 -0.8
2,346,230 + Shewana3_1970 0.25 -0.6
2,346,295 + Shewana3_1970 0.34 -0.5
2,346,341 + Shewana3_1970 0.41 +1.5
2,346,356 + Shewana3_1970 0.43 +1.5
2,346,521 + +1.5
2,346,545 - Shewana3_1970 0.71 -0.8
2,346,723 - +1.2
2,347,511 + +1.0
2,347,522 + -1.6
2,347,530 - +0.6
2,347,722 + -0.8
2,347,727 + +0.3
2,347,735 - -0.0

Or see this region's nucleotide sequence