Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1927 and Shewana3_1928 are separated by 47 nucleotides Shewana3_1928 and Shewana3_1929 are separated by 205 nucleotides Shewana3_1929 and Shewana3_1930 are separated by 36 nucleotides
Shewana3_1927: Shewana3_1927 - GCN5-related N-acetyltransferase (RefSeq), at 2,292,511 to 2,292,987
_1927
Shewana3_1928: Shewana3_1928 - hypothetical protein (RefSeq), at 2,293,035 to 2,293,550
_1928
Shewana3_1929: Shewana3_1929 - alkylhydroperoxidase (RefSeq), at 2,293,756 to 2,294,205
_1929
Shewana3_1930: Shewana3_1930 - AraC family transcriptional regulator (RefSeq), at 2,294,242 to 2,295,132
_1930
Position (kb)
2293
2294
2295 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2292.769 kb on + strand, within Shewana3_1927 at 2293.173 kb on + strand, within Shewana3_1928 at 2293.173 kb on + strand, within Shewana3_1928 at 2293.173 kb on + strand, within Shewana3_1928 at 2293.181 kb on - strand, within Shewana3_1928 at 2293.233 kb on + strand, within Shewana3_1928 at 2293.241 kb on - strand, within Shewana3_1928 at 2293.277 kb on + strand, within Shewana3_1928 at 2293.387 kb on + strand, within Shewana3_1928 at 2293.488 kb on + strand, within Shewana3_1928 at 2293.764 kb on + strand at 2294.126 kb on + strand, within Shewana3_1929 at 2294.137 kb on + strand, within Shewana3_1929 at 2294.601 kb on - strand, within Shewana3_1930 at 2294.652 kb on + strand, within Shewana3_1930 at 2294.746 kb on - strand, within Shewana3_1930 at 2294.844 kb on - strand, within Shewana3_1930 at 2294.985 kb on + strand, within Shewana3_1930
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,292,769 + Shewana3_1927 0.54 -0.1 2,293,173 + Shewana3_1928 0.27 -1.1 2,293,173 + Shewana3_1928 0.27 +2.4 2,293,173 + Shewana3_1928 0.27 -1.5 2,293,181 - Shewana3_1928 0.28 +1.5 2,293,233 + Shewana3_1928 0.38 -0.1 2,293,241 - Shewana3_1928 0.40 +1.5 2,293,277 + Shewana3_1928 0.47 +0.5 2,293,387 + Shewana3_1928 0.68 +0.5 2,293,488 + Shewana3_1928 0.88 +0.5 2,293,764 + +3.1 2,294,126 + Shewana3_1929 0.82 -1.2 2,294,137 + Shewana3_1929 0.85 -1.1 2,294,601 - Shewana3_1930 0.40 +1.2 2,294,652 + Shewana3_1930 0.46 +0.4 2,294,746 - Shewana3_1930 0.57 -0.4 2,294,844 - Shewana3_1930 0.68 -0.8 2,294,985 + Shewana3_1930 0.83 +0.0
Or see this region's nucleotide sequence